1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtaagctaccgatctctgacttcttattcaaccaaatatgttgtgtgtcgtattttccttttgtgtttacgaaaatatctttgactcaccttttgtgactgggaaatatatgtaataattatatttttttcatactcacttatttaggtattctatatctcttctaaacatgcagGTTGTTCCGGCATGGCTGGGATGTTTGCCATTAAAAGGAGACCTTGTGGAGGCTAAAATTGTTCATGAGCAGCTTTGCAAAATGGTCGAGAG
species | Physcomitrella patens |
transcript | PP1S207_33V6.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: AAAAATTTGTGAGCATCAAAGGGATAATATTGATGGTGCCACC GTTGTTCCGGCATGGCTGGGATGTTTGCCATTAAAAGGAGACCTTGTGGAGEST: gi|162170619|gb|FC347115.1|FC347115
genomic: AAAAATTTGTGAGCATCAAAGGGATAATATTGATGGTGCCACCgtaagctacc ... aaacatgcagGTTGTTCCGGCATGGCTGGGATGTTTGCCATTAAAAGGAGACCTTGTGGAG
EST: CTCTCGGAAAAATTTGTGAGCATCAAAGGGATAATATTGATGGTGCCACC GTTGTTCCGGCATGGCTGGGATGTTTGCCATTAAAAGGAGACCTTGTGGAGEST: gi|162245369|gb|FC421271.1|FC421271
genomic: CTCTCGGAAAAATTTGTGAGCATCAAAGGGATAATATTGATGGTGCCACCgtaagctacc ... aaacatgcagGTTGTTCCGGCATGGCTGGGATGTTTGCCATTAAAAGGAGACCTTGTGGAG
EST: GAAAAATTTGTGAGCATCAAAGGGATAATATTGATGGTGCCACC GTTGTTCCGGCATGGCTGGGATGTTTGCCATTAAAAGGAGACCTTGTGGAG
genomic: GAAAAATTTGTGAGCATCAAAGGGATAATATTGATGGTGCCACCgtaagctacc ... aaacatgcagGTTGTTCCGGCATGGCTGGGATGTTTGCCATTAAAAGGAGACCTTGTGGAG
atatttttttcatactcacttatttaggtattctatatctcttctaaacatgcagGTTGTTCCGGCATGGCTGGGATGTTTGCCATTAAAAGGAGACCTTGTGGAGGCTAAAATTGTTCATGAGCAGCTTTGCAAAATGGTCGAGAG
tctcttcta CT-rich tract
tattctatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctaccgatctctgacttcttattcaaccaaatatgttgtgtgtcgtattttccttttgtgtttacgaaaatatctttgactcaccttttgtgactgggaaatatatgtaataattatatttttttcatactcacttatttaggtattctatatctcttctaaacatgcagGTTGTTCCGGCATGGCTGGGATGTTTGCCATTAAAAGGAGACCTTGTGGAGGCTAAAATTGTTCATGAGCAGCTTTGCAAAATGGTCGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT