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...gctgcactcggttacttagttaatcaagtattttgaaacctcgatatcgagggtctatgtaatgacgatatatttttgtcgttttcaattacttaaacagGTGTCTGCTGCTCGTGAAGAAGTACCCGGTCGTCGTGGGTACCCTGGTTATATGTACACCGATCTTGCCACCATTTATGAACGTGCTGGACGTATTGAGG
species | Physcomitrella patens |
transcript | PP1S100_117V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGTTGGTCATACTTACAGATATGAGTTCTTACGCAGATGCGTTGCGAGAG GTGTCTGCTGCTCGTGAAGAAGTACCCGGTCGTCGTGGGTACCCTGGTTATEST: gi|162230898|gb|FC406737.1|FC406737
genomic: TGTTGGTCATACTTACAGATATGAGTTCTTACGCAGATGCGTTGCGAGAGgtgcaaattt ... acttaaacagGTGTCTGCTGCTCGTGAAGAAGTACCCGGTCGTCGTGGGTACCCTGGTTAT
EST: TGTTGGTCATACTTACAGATATGAGTTCTTACGCAGATGCGTTGCGAGAG GTGTCTGCTGCTCGTGAAGAAGTACCCGGTCGTCGTGGGTACCCTGGTTATEST: gi|162209307|gb|FC385227.1|FC385227
genomic: TGTTGGTCATACTTACAGATATGAGTTCTTACGCAGATGCGTTGCGAGAGgtgcaaattt ... acttaaacagGTGTCTGCTGCTCGTGAAGAAGTACCCGGTCGTCGTGGGTACCCTGGTTAT
EST: TGTTGGTCATACTTACAGATATGAGTTCTTACGCAGATGCGTTGCGAGAG GTGTCTGCTGCTCGTGAAGAAGTACCCGGTCGTCGTGGGTACCCTGGTTATEST: gi|162153495|gb|FC329381.1|FC329381
genomic: TGTTGGTCATACTTACAGATATGAGTTCTTACGCAGATGCGTTGCGAGAGgtgcaaattt ... acttaaacagGTGTCTGCTGCTCGTGAAGAAGTACCCGGTCGTCGTGGGTACCCTGGTTAT
EST: TGTTGGTCATACTTACAGATATGAGTTCTTACGCAGATGCGTTGCGAGAG GTGTCTGCTGCTCGTGAAGAAGTACCCGGTCGTCGTGGGTACCCTGGTTATEST: gi|162232324|gb|FC408667.1|FC408667
genomic: TGTTGGTCATACTTACAGATATGAGTTCTTACGCAGATGCGTTGCGAGAGgtgcaaattt ... acttaaacagGTGTCTGCTGCTCGTGAAGAAGTACCCGGTCGTCGTGGGTACCCTGGTTAT
EST: TGTTGGTCATACTTACAGATATGAGTTCTTACGCAGATGCGTTGCGAGAG GTGTCTGCTGCTCGTGAAGAAGTACCCGGTCGTCGTGGGTACCCTGGTTAT
genomic: TGTTGGTCATACTTACAGATATGAGTTCTTACGCAGATGCGTTGCGAGAGgtgcaaattt ... acttaaacagGTGTCTGCTGCTCGTGAAGAAGTACCCGGTCGTCGTGGGTACCCTGGTTAT
atcgagggtctatgtaatgacgatatatttttgtcgttttcaattacttaaacagGTGTCTGCTGCTCGTGAAGAAGTACCCGGTCGTCGTGGGTACCCTGGTTATATGTACACCGATCTTGCCACCATTTATGAACGTGCTGGACGTATTGAGG
ttttcaattacttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgcactcggttacttagttaatcaagtattttgaaacctcgatatcgagggtctatgtaatgacgatatatttttgtcgttttcaattacttaaacagGTGTCTGCTGCTCGTGAAGAAGTACCCGGTCGTCGTGGGTACCCTGGTTATATGTACACCGATCTTGCCACCATTTATGAACGTGCTGGACGTATTGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA