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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtatttattcttaatttcatagtactcttatgacacatgaatttgttcatttgttagaggatttgtgcggtatatgatttattcagaggataagattgagaatcagtccgctctctctctcgctctgcagGTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAG

Basic information

species Physcomitrella patens
transcript PP1S100_117V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100397347|gb|BY972453.1|BY972453
EST:     GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAG                         GTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
genomic: GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAGgtttgtattt ... cgctctgcagGTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
EST: gi|162221566|gb|FC397583.1|FC397583
EST:     GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAG                         GTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
genomic: GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAGgtttgtattt ... cgctctgcagGTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
EST: gi|100392297|gb|BY953293.1|BY953293
EST:     GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAG                         GTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
genomic: GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAGgtttgtattt ... cgctctgcagGTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
EST: gi|100441292|gb|BY962581.1|BY962581
EST:     GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAG                         GTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
genomic: GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAGgtttgtattt ... cgctctgcagGTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
EST: gi|100360601|gb|BY984200.1|BY984200
EST:     GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAG                         GTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
genomic: GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAGgtttgtattt ... cgctctgcagGTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
EST: gi|67574817|gb|BJ947641.1|BJ947641
EST:     GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAG                         GTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
genomic: GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAGgtttgtattt ... cgctctgcagGTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
EST: gi|162278567|gb|FC454029.1|FC454029
EST:     GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAG                         GTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
genomic: GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAGgtttgtattt ... cgctctgcagGTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
EST: gi|67572934|gb|BJ945758.1|BJ945758
EST:     GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAG                         GTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
genomic: GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAGgtttgtattt ... cgctctgcagGTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
EST: gi|208357262|gb|DC910659.1|DC910659
EST:     GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAG                         GTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
genomic: GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAGgtttgtattt ... cgctctgcagGTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
EST: gi|100432786|gb|BY978739.1|BY978739
EST:     GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAG                         GTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
genomic: GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAGgtttgtattt ... cgctctgcagGTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
EST: gi|18348999|gb|BJ181048.1|BJ181048
EST:     GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAG                         GTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
genomic: GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAGgtttgtattt ... cgctctgcagGTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
EST: gi|100425066|gb|BY976955.1|BY976955
EST:     GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAG                         GTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
genomic: GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAGgtttgtattt ... cgctctgcagGTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
EST: gi|100437022|gb|BY979644.1|BY979644
EST:     GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAG                         GTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
genomic: GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAGgtttgtattt ... cgctctgcagGTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
EST: gi|18357729|gb|BJ189788.1|BJ189788
EST:     GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAG                         GTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
genomic: GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAGgtttgtattt ... cgctctgcagGTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
EST: gi|18342277|gb|BJ174312.1|BJ174312
EST:     GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAG                         GTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC
genomic: GCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAGgtttgtattt ... cgctctgcagGTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttattcagaggataagattgagaatcagtccgctctctctctcgctctgcagGTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAG
                               tccgctctctctctcg  CT-rich tract
              ataagatt  TA-rich tract