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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTTGAGGGGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAGgtaattcaatcctcttttttctttctttttttggaggaagtttttaacagatttctcttgctttatgcatgttcgaacatttatcttcaaatattatcat...

Basic information

species Physcomitrella patens
transcript PP1S100_117V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100397347|gb|BY972453.1|BY972453
EST:     GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAG                         GTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
genomic: GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAGgtaattcaat ... tactgtgaagGTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
EST: gi|162221566|gb|FC397583.1|FC397583
EST:     GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAG                         GTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
genomic: GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAGgtaattcaat ... tactgtgaagGTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
EST: gi|100392297|gb|BY953293.1|BY953293
EST:     GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAG                         GTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
genomic: GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAGgtaattcaat ... tactgtgaagGTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
EST: gi|100441292|gb|BY962581.1|BY962581
EST:     GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAG                         GTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
genomic: GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAGgtaattcaat ... tactgtgaagGTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
EST: gi|100360601|gb|BY984200.1|BY984200
EST:     GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAG                         GTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
genomic: GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAGgtaattcaat ... tactgtgaagGTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
EST: gi|67574817|gb|BJ947641.1|BJ947641
EST:     GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAG                         GTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
genomic: GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAGgtaattcaat ... tactgtgaagGTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
EST: gi|162278567|gb|FC454029.1|FC454029
EST:     GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAG                         GTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
genomic: GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAGgtaattcaat ... tactgtgaagGTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
EST: gi|67572934|gb|BJ945758.1|BJ945758
EST:     GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAG                         GTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
genomic: GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAGgtaattcaat ... tactgtgaagGTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
EST: gi|208357262|gb|DC910659.1|DC910659
EST:     GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAG                         GTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
genomic: GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAGgtaattcaat ... tactgtgaagGTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
EST: gi|100432786|gb|BY978739.1|BY978739
EST:     GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAG                         GTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
genomic: GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAGgtaattcaat ... tactgtgaagGTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
EST: gi|18348999|gb|BJ181048.1|BJ181048
EST:     GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAG                         GTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
genomic: GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAGgtaattcaat ... tactgtgaagGTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
EST: gi|100425066|gb|BY976955.1|BY976955
EST:     GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAG                         GTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
genomic: GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAGgtaattcaat ... tactgtgaagGTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
EST: gi|100437022|gb|BY979644.1|BY979644
EST:     GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAG                         GTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
genomic: GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAGgtaattcaat ... tactgtgaagGTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
EST: gi|18357729|gb|BJ189788.1|BJ189788
EST:     GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAG                         GTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
genomic: GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAGgtaattcaat ... tactgtgaagGTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
EST: gi|18342277|gb|BJ174312.1|BJ174312
EST:     GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAG                         GTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA
genomic: GGACCTCGGGTATCGATAATAAGCATACCACCATAGAGTTCACCGGAGAGgtaattcaat ... tactgtgaagGTGCTTAAAACACCAGTGTCGCTGGACATGCTTGGGCGTATCTTCAACGGA