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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccctcgtgaatactcctgtgactgcaagcagaactcaatttgttcaatttttatttaatccatgccgctcatttccgtgcatactccgctatgtcaactctatttgttgcttacatcctcacttgttttgttttccagTTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGTCCTTATGATACTCGTGACATTTTCCAGTCATTGGACCTTGCCTGGTCAT

Basic information

species Physcomitrella patens
transcript PP1S100_117V6.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208395424|gb|DC924478.1|DC924478
EST:     AAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTG                         TTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGT
genomic: AAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTGgtaccctcgt ... tgttttccagTTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGT
EST: gi|37837091|gb|BJ595099.1|BJ595099
EST:     AAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTG                         TTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGT
genomic: AAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTGgtaccctcgt ... tgttttccagTTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGT
EST: gi|162153494|gb|FC329380.1|FC329380
EST:     AAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTG                         TTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGT
genomic: AAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTGgtaccctcgt ... tgttttccagTTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGT
EST: gi|162278566|gb|FC454028.1|FC454028
EST:     AAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTG                         TTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGT
genomic: AAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTGgtaccctcgt ... tgttttccagTTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGT
EST: gi|162230898|gb|FC406737.1|FC406737
EST:     AAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTG                         TTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGT
genomic: AAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTGgtaccctcgt ... tgttttccagTTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGT
EST: gi|67698241|gb|BJ958474.1|BJ958474
EST:     AAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTG                         TTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGT
genomic: AAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTGgtaccctcgt ... tgttttccagTTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGT
EST: gi|162269042|gb|FC445534.1|FC445534
EST:     AAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTG                         TTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGT
genomic: AAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTGgtaccctcgt ... tgttttccagTTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGT
EST: gi|162153495|gb|FC329381.1|FC329381
EST:     AAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTG                         TTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGT
genomic: AAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTGgtaccctcgt ... tgttttccagTTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGT
EST: gi|162221565|gb|FC397582.1|FC397582
EST:     AAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTG                         TTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGT
genomic: AAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTGgtaccctcgt ... tgttttccagTTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGT
EST: gi|37835967|gb|BJ593979.1|BJ593979
EST:     AAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTG                         TTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGT
genomic: AAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTGgtaccctcgt ... tgttttccagTTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGT
EST: gi|162232324|gb|FC408667.1|FC408667
EST:     AAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTG                         TTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGT
genomic: AAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTGgtaccctcgt ... tgttttccagTTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccgctatgtcaactctatttgttgcttacatcctcacttgttttgttttccagTTATATCTCGAATTTCTTGATAAGTTCGAGCGCAAGTTTGTGGCGCAAGGTCCTTATGATACTCGTGACATTTTCCAGTCATTGGACCTTGCCTGGTCAT
                                tcctcac  putative branch site (score: 2)
                                tcctcacttgttttgt  CT-rich tract
                                          ttttgtttt  TA-rich tract