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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAAGGATATGGAATGACAGAGACATCCTGTGTCATCGCTACAATGGATTGTGATGATAGGTTAATTGGTCATGTTGGACCTCCAAATCCATCTTGTGgtaagatctgtgtttggattttcaaggatgtaactagatttgcttggataaaaaacttgtccttttgttcacagtaatccctcactgttatggtctgcca...

Basic information

species Oryza sativa
transcript LOC_Os11g04980.2
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g04980.2 (Oryza sativa), 5'ss of exon 16
lower sequence: GRMZM2G176546_T01 (Zea mays), 5'ss of exon 7
ATTGAAGGATATGGAATGACAGAGACATCCTGTGTCATCGCTACAATGGATTGTGATGATAGGTTAATTGGTCATGTTGGACCTCCAAATCCATCTTGTGgtaagatctgtgtttggattttcaaggatgtaactagatttgcttggataaaaaacttgtccttttgttcacagtaatccctcactgttatggtctgcca-----
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CTTGAAGGCTATGGAATGACGGAGACATCCTGTATCATATCTGCAATGGATATTGGTGACAGATCAATTGGTCATGTTGGATCCCCAACTGCATCTTGTGgtaagctccgcgtttcaatttg-aagggtataa-tgaatttgattgggtagca--cttgcacttgtgttgaaaatattgtc-catgaattcaacttataatatat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29679209|gb|CB675484.1|CB675484
EST:     TTGTGATGATAGGTTAATTGGTCATGTTGGACCTCCAAATCCATCTTGTG                         AGATTAAGCTAGTGGATGTCCCAGAAATGAAT-ACACCTCT
genomic: TTGTGATGATAGGTTAATTGGTCATGTTGGACCTCCAAATCCATCTTGTGgtaagatctg ... catttttcagAGATTAAGCTAGTGGATGTCCCAGAAATGAATTACACCTCT
EST: gi|66919239|gb|CX106087.1|CX106087
EST:     TTGTGATGATAGGTTAA-TGGTCATGTTGGACCTCCAAATCCATCTTGTG                         AGATTAAGCTAGTGGATGTCCCAGAAATGAATTACACCTCTGAGGATCAAC
genomic: TTGTGATGATAGGTTAATTGGTCATGTTGGACCTCCAAATCCATCTTGTGgtaagatctg ... catttttcagAGATTAAGCTAGTGGATGTCCCAGAAATGAATTACACCTCTGAGGATCAAC
EST: gi|29679207|gb|CB675482.1|CB675482
EST:     TTGTGATGATAGGTTAATTGGTCATGTTGGACCTCCAAATCCATCTTGTG                         AGATTAAGCTAGTGGATGTCCCAGAAATGAATTACACCTCTG
genomic: TTGTGATGATAGGTTAATTGGTCATGTTGGACCTCCAAATCCATCTTGTGgtaagatctg ... catttttcagAGATTAAGCTAGTGGATGTCCCAGAAATGAATTACACCTCTG
EST: gi|58590451|gb|CF988759.1|CF988759
EST:     TTGTGATGATAGGTTAATTGGTCATGTTGGACCTCCAAATCCATCTTGTG                         AGATTAAGCTAGTGGATGTCCCAGAAATGAATTACACCTCTGAGGATCAAC
genomic: TTGTGATGATAGGTTAATTGGTCATGTTGGACCTCCAAATCCATCTTGTGgtaagatctg ... catttttcagAGATTAAGCTAGTGGATGTCCCAGAAATGAATTACACCTCTGAGGATCAAC
EST: gi|58595336|gb|CF993644.1|CF993644
EST:     TTGTGATGATGGGTTAATTGGTCATGTTGGACCTCCAAATCCATCTTGTG                         AGATTAAGCTAGTGGATGTCCCAGAAATGAATTACACCTCTGAGGATCAAC
genomic: TTGTGATGATAGGTTAATTGGTCATGTTGGACCTCCAAATCCATCTTGTGgtaagatctg ... catttttcagAGATTAAGCTAGTGGATGTCCCAGAAATGAATTACACCTCTGAGGATCAAC
EST: gi|109974356|gb|DT806865.1|DT806865
EST:     TTGTGATGATAGGTTAATTGGTCATGTTGGACCTCCAAATCCATCTTGTG                         AGATTAAACTAGTGGATGTCCCAAAAATGAATTACACCTCTGAGGATCAAC
genomic: TTGTGATGATAGGTTAATTGGTCATGTTGGACCTCCAAATCCATCTTGTGgtaagatctg ... catttttcagAGATTAAGCTAGTGGATGTCCCAGAAATGAATTACACCTCTGAGGATCAAC