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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACATCTCATATCTACCTTTAGCTCACATCTATGAGAGAGTTAACCAGATTGCACTGCTTCACTATGGAGTTGCCATTGGATTCTACCAAGGGgtatgcagatccaaaaccattcaggatgttaatttggtagttctttgcatttgctgtttgtgtaaataatagaacatgtagaacaatggagtttctgact...

Basic information

species Oryza sativa
transcript LOC_Os11g04980.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g04980.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G176546_T01 (Zea mays), 5'ss of exon 3
GTACATCTCATATCTACCTTTAGCTCACATCTATGAGAGAGTTAACCAGATTGCACTGCTTCACTATGGAGTTGCCATTGGATTCTACCAAGGGgtatgcagatccaaaaccattcaggatgttaatttggtagttctttgcatttgctgtttgtgtaaataatagaacatgtagaacaatggagtttctgact--
||| ||||||||||| ||||| |||||||| || ||||| |||||||||||||||   || |||| ||| |||||||||||||||||||||||||||||||||| |||    |||  | ||| ||  |   ||  |   |  | |   |   |   |||  |||     || |  |  |   || ||  | |    
GTATATCTCATATCTGCCTTTGGCTCACATTTACGAGAGGGTTAACCAGATTGCAGCACTGCACTGTGGTGTTGCCATTGGATTCTACCAAGGGgtatgcagattcaactttatttggaatgatatctatataactacata-actacataactacataa-caatttttgatttgcattatgagaattaattaacac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29679209|gb|CB675484.1|CB675484
EST:     ACCAGATTGCACTGCTTCACTATGGAGTTGCCATTGGATTCTACCAAGGG                         GATAATTTGAAGCTGATGGATGATCTGGCTGCACTGAGACCAACAGTATTT
genomic: ACCAGATTGCACTGCTTCACTATGGAGTTGCCATTGGATTCTACCAAGGGgtatgcagat ... tcatttccagGATAATTTGAAGCTGATGGATGATCTGGCTGCACTGAGACCAACAGTATTT
EST: gi|29679207|gb|CB675482.1|CB675482
EST:     ACCAGATTGCACTGCTTCACTATGGAGTTGCCATTGGATTCTACCAAGGG                         GATAATTTGAAGCTGATGGATGATCTGGCTGCACTGAGACCAACAGTATTT
genomic: ACCAGATTGCACTGCTTCACTATGGAGTTGCCATTGGATTCTACCAAGGGgtatgcagat ... tcatttccagGATAATTTGAAGCTGATGGATGATCTGGCTGCACTGAGACCAACAGTATTT
EST: gi|29671403|gb|CB667678.1|CB667678
EST:     ACCAGATTGCACTGCTTCACTATGGAGTTGCCATTGGATTCTACCAAGGG                         GATAATTTGAAGCTGATGGATGATCTGGCTGCACTGAGACCAACAGTATTT
genomic: ACCAGATTGCACTGCTTCACTATGGAGTTGCCATTGGATTCTACCAAGGGgtatgcagat ... tcatttccagGATAATTTGAAGCTGATGGATGATCTGGCTGCACTGAGACCAACAGTATTT
EST: gi|58663800|gb|CK052486.1|CK052486
EST:     ACCAGATTGCACTGCTTCACTATGGAGTTGCCATTGGATTCTACCAAGGG                         GATAATTTGAAGCTGATGGATGATCTGGCTGCACTGAGACCAACAGTATTT
genomic: ACCAGATTGCACTGCTTCACTATGGAGTTGCCATTGGATTCTACCAAGGGgtatgcagat ... tcatttccagGATAATTTGAAGCTGATGGATGATCTGGCTGCACTGAGACCAACAGTATTT
EST: gi|58688175|gb|CK076862.1|CK076862
EST:     ACCAGATTGCACTGCTTCACTATGGAGTTGCCATTGGATTCTACCAAGGG                         GATAATTTGAAGCTGATGGATGATCTGGCTGCACTGAGACCAACAGTATTT
genomic: ACCAGATTGCACTGCTTCACTATGGAGTTGCCATTGGATTCTACCAAGGGgtatgcagat ... tcatttccagGATAATTTGAAGCTGATGGATGATCTGGCTGCACTGAGACCAACAGTATTT
EST: gi|29670550|gb|CB666825.1|CB666825
EST:     ACCAGATTGCACTGCTTCACTATGGAGTTGCCATTGGATTCTACCAAGGG                         GATAATTTGAAGCTGATGGATGATCTGGCTGCACTGAGACCAACAGTATTT
genomic: ACCAGATTGCACTGCTTCACTATGGAGTTGCCATTGGATTCTACCAAGGGgtatgcagat ... tcatttccagGATAATTTGAAGCTGATGGATGATCTGGCTGCACTGAGACCAACAGTATTT