1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTGgtactaattactttaacttactatgccttttcttcttttctaccagtaataattatcatggatgccgcatcaattttcag
species | Oryza sativa |
transcript | LOC_Os08g45180.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTG GTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGEST: gi|58674585|gb|CK063272.1|CK063272
genomic: ATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTGgtactaatta ... caattttcagGTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAG
EST: ATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTG GTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGEST: gi|88403626|gb|CI575510.1|CI575510
genomic: ATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTGgtactaatta ... caattttcagGTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAG
EST: ATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACAC-TCTCATATCCTG GTTGCAGAGGAGGGGAATTCACCTTTCACCTATATTATTGTTGACAAACAGEST: gi|29672289|gb|CB668564.1|CB668564
genomic: ATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTGgtactaatta ... caattttcagGTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAG
EST: ATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTG GTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGEST: gi|88729957|gb|CI753572.1|CI753572
genomic: ATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTGgtactaatta ... caattttcagGTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAG
EST: ATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTG GTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCEST: gi|58690473|gb|CK079160.1|CK079160
genomic: ATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTGgtactaatta ... caattttcagGTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACC
EST: ATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTG -----AG-G-AGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGEST: gi|58611246|gb|CK038958.1|CK038958
genomic: ATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTGgtactaatta ... caattttcagGTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAG
EST: ATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTG GTTGCAGAGGAEST: gi|29656464|gb|CB652739.1|CB652739
genomic: ATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTGgtactaatta ... caattttcagGTTGCAGAGGA
EST: ATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTG GTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGEST: gi|29664341|gb|CB660616.1|CB660616
genomic: ATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTGgtactaatta ... caattttcagGTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAG
EST: ATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTG GTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAG
genomic: ATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTGgtactaatta ... caattttcagGTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTGgtactaattactttaacttactatgccttttcttcttttctaccagtaataattatcatggatgccgcatcaattttcag
- - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - AAGATG