1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GATCCGAAGCCTAACGCTCAAGGTCCAGGGAGGCGGCAACACTGGCAATGCCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGgtactacccacttcacttgctcctccttcaattcaattattactcctatttacgaaagcctgcactaccag
species | Oryza sativa |
transcript | LOC_Os08g45180.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAG GTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATEST: gi|29659991|gb|CB656266.1|CB656266
genomic: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGgtactaccca ... gcactaccagGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGAT
EST: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAG GTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATEST: gi|88406865|gb|CI578393.1|CI578393
genomic: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGgtactaccca ... gcactaccagGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGAT
EST: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAG GTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATEST: gi|58674585|gb|CK063272.1|CK063272
genomic: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGgtactaccca ... gcactaccagGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGAT
EST: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAG GTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATEST: gi|88410251|gb|CI575849.1|CI575849
genomic: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGgtactaccca ... gcactaccagGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGAT
EST: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAG GTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATEST: gi|88403626|gb|CI575510.1|CI575510
genomic: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGgtactaccca ... gcactaccagGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGAT
EST: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAG GTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATEST: gi|88423490|gb|CI579202.1|CI579202
genomic: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGgtactaccca ... gcactaccagGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGAT
EST: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAG GTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGGAAGATGATEST: gi|88447757|gb|CI579833.1|CI579833
genomic: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGgtactaccca ... gcactaccagGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGAT
EST: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAG GTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATEST: gi|29672289|gb|CB668564.1|CB668564
genomic: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGgtactaccca ... gcactaccagGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGAT
EST: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAG GTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATEST: gi|88409812|gb|CI571069.1|CI571069
genomic: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGgtactaccca ... gcactaccagGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGAT
EST: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAG GTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATEST: gi|88729957|gb|CI753572.1|CI753572
genomic: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGgtactaccca ... gcactaccagGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGAT
EST: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAG GTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATEST: gi|88422711|gb|CI573873.1|CI573873
genomic: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGgtactaccca ... gcactaccagGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGAT
EST: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAG GTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATEST: gi|58690473|gb|CK079160.1|CK079160
genomic: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGgtactaccca ... gcactaccagGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGAT
EST: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAG GTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATEST: gi|87023595|gb|CI286346.1|CI286346
genomic: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGgtactaccca ... gcactaccagGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGAT
EST: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAG GTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATEST: gi|58611246|gb|CK038958.1|CK038958
genomic: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGgtactaccca ... gcactaccagGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGAT
EST: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAG GTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATEST: gi|29656464|gb|CB652739.1|CB652739
genomic: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGgtactaccca ... gcactaccagGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGAT
EST: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAG GTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATEST: gi|29664341|gb|CB660616.1|CB660616
genomic: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGgtactaccca ... gcactaccagGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGAT
EST: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAG GTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATEST: gi|88413351|gb|CI581366.1|CI581366
genomic: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGgtactaccca ... gcactaccagGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGAT
EST: CCTTGACCGCCGCTACTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAG GTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGAT
genomic: CCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGgtactaccca ... gcactaccagGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCCGAAGCCTAACGCTCAAGGTCCAGGGAGGCGGCAACACTGGCAATGCCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGgtactacccacttcacttgctcctccttcaattcaattattactcctatttacgaaagcctgcactaccag
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