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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGATAATAGAGACTGGTAATCCAGATGCATTCAAGCAGTACCTGCAAGAGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttgtgacgatctaactagtgttctctcttcatttctacttctataacttcatcatctttatgtaatataatgttccag

Basic information

species Oryza sativa
transcript LOC_Os08g20270.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g20270.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G016827_T03 (Zea mays), 5'ss of exon 7
GGAGATAATAGAGACTGGTAATCCAGATGCATTCAAGCAGTACCTGCAAGAGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcg-------ttgtgacgatctaactagtgttctctcttcatttctacttctataacttcatcatctttatgtaatataat-gttccag
|||||| |||||||||||  |||| |  || |||||  | |||||||| ||||| ||||| |||||||| |||||||||||||||||||| |||||   ||||||         || ||    || ||    |  ||||  |  ||  || |   | || ||||| |  ||  || |  | |  | | | |||
GGAGATCATAGAGACTGGCGATCCCGTAGCGTTCAAAGAATACCTGCAGGAGTACGAGAACACCATATGCGGACGCCACCCCATCAGCGTCTTCCTTCACgtaagtaaatgactttctgcttgtcaaaaacctactctcgatgaatgccttccgtttta-cttcagccactgcattttttttgtttgcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88980011|gb|CI026301.1|CI026301
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|88258046|gb|CI360632.1|CI360632
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|88849155|gb|CI087677.1|CI087677
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|88482578|gb|CI419849.1|CI419849
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|88967223|gb|CI392178.1|CI392178
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|86254986|gb|CI017106.1|CI017106
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|55408283|gb|CV720659.1|CV720659
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|88385073|gb|CI561729.1|CI561729
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|88846859|gb|CI005838.1|CI005838
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|12404774|gb|AU166375.1|AU166375
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|88380314|gb|CI518684.1|CI518684
EST:     ATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTTTTCGGTATGA
genomic: ATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagAT-GCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGA
EST: gi|86872979|gb|CI326976.1|CI326976
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|89179701|gb|CI043980.1|CI043980
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|218488302|gb|FG946415.1|FG946415
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTCGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|55411914|gb|CV724290.1|CV724290
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|88438074|gb|CI536233.1|CI536233
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|55409410|gb|CV721786.1|CV721786
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|86251794|gb|CI018986.1|CI018986
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|33810212|gb|CF330997.1|CF330997
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|38476889|gb|CF961022.1|CF961022
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTCGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|89184631|gb|CI007056.1|CI007056
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTTCGGTATGA
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTG-TTCGGTATGA
EST: gi|86600974|gb|CI356731.1|CI356731
EST:     AGTATGAGAATACCATATGTGGACCCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|86835196|gb|CI346671.1|CI346671
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|86886372|gb|CI336075.1|CI336075
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|88509956|gb|CI437462.1|CI437462
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|87029686|gb|CI257481.1|CI257481
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|88491183|gb|CI428455.1|CI428455
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: gi|88470881|gb|CI408152.1|CI408152
EST:     AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC                         ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG