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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTTAGGCCCTTCACATCACTACTATACTCCAAAATGTGCATTAACAAGAGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAGgtatgctgctactgagctttgtttttgtttgacttggatattttactttcataatattacatgccatgcaatctgttaaattacggtctttacctaagat...

Basic information

species Oryza sativa
transcript LOC_Os08g20270.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g20270.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G016827_T03 (Zea mays), 5'ss of exon 4
CTGTTAGGCCCTTCACATCACTACTATACTCCAAAATGTGCATTAACAAGAGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAGgtatgctgctactgagctttgtttttgtttgacttggatattttactttcataatattacatgccatgcaatctgttaaattacggtctttacctaagat-------
||| | |||||||| ||||||||||| |||||||||||||| ||||| || ||| || | ||  | |||||||| |||||||||||||||||||| ||||||  |    |||| |  || | |   |||  |  |   ||   || ||   ||   |||  | |  | |  ||       ||  ||  || |    || |       
CTGCTTGGCCCTTCTCATCACTACTACACTCCAAAATGTGCTTTAACCAGGGCTTCTGTCTACTGTACCCCAATCGGGGATTTGCCAGTAGACCAGGAAGgtgagtgtttactcaatttggat--ggttgaatgtttttagcctagttctgta---ttatgtactctactgtcaa--gggttttgggattcaaggtagctggacctc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88390884|gb|CI611110.1|CI611110
EST:     AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAG                         TAATTGAGGAACTCAACGCTA-AGGAAAATTTGATTTTAT
genomic: AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAGgtatgctgct ... gtttttgcagTAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTAT
EST: gi|88288464|gb|CI661669.1|CI661669
EST:     AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAG                         TAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTA
genomic: AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAGgtatgctgct ... gtttttgcagTAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTA
EST: gi|40486364|gb|BX897928.1|BX897928
EST:     AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAG                         TAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTG
genomic: AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAGgtatgctgct ... gtttttgcagTAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTG
EST: gi|66917040|gb|CX103888.1|CX103888
EST:     AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAG                         TAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTG
genomic: AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAGgtatgctgct ... gtttttgcagTAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTG
EST: gi|33810210|gb|CF330996.1|CF330996
EST:     AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAG                         TAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTG
genomic: AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAGgtatgctgct ... gtttttgcagTAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTG
EST: gi|58678103|gb|CK066790.1|CK066790
EST:     AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAG                         TAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTG
genomic: AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAGgtatgctgct ... gtttttgcagTAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTG