1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcgttgtgacgatctaactagtgttctctcttcatttctacttctataacttcatcatctttatgtaatataatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGCAGTCAAGCCAGTGCAAGAGCATGAGGGACAGCAGCGTGAGCTACGCTT
species | Oryza sativa |
transcript | LOC_Os08g20270.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|88258046|gb|CI360632.1|CI360632
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|88849155|gb|CI087677.1|CI087677
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|88482578|gb|CI419849.1|CI419849
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|88967223|gb|CI392178.1|CI392178
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|86254986|gb|CI017106.1|CI017106
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|55408283|gb|CV720659.1|CV720659
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|88385073|gb|CI561729.1|CI561729
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|88846859|gb|CI005838.1|CI005838
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|12404774|gb|AU166375.1|AU166375
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|88380314|gb|CI518684.1|CI518684
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: ATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTTTTCGGTATGAEST: gi|86872979|gb|CI326976.1|CI326976
genomic: ATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagAT-GCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGA
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|89179701|gb|CI043980.1|CI043980
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|218488302|gb|FG946415.1|FG946415
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTCGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|55411914|gb|CV724290.1|CV724290
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|88438074|gb|CI536233.1|CI536233
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|55409410|gb|CV721786.1|CV721786
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|86251794|gb|CI018986.1|CI018986
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|33810212|gb|CF330997.1|CF330997
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|38476889|gb|CF961022.1|CF961022
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTCGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|89184631|gb|CI007056.1|CI007056
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTTCGGTATGAEST: gi|86600974|gb|CI356731.1|CI356731
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTG-TTCGGTATGA
EST: AGTATGAGAATACCATATGTGGACCCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|86835196|gb|CI346671.1|CI346671
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|86886372|gb|CI336075.1|CI336075
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|88509956|gb|CI437462.1|CI437462
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|87029686|gb|CI257481.1|CI257481
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|88491183|gb|CI428455.1|CI428455
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGEST: gi|88470881|gb|CI408152.1|CI408152
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
EST: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGC ATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
genomic: AGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCgtaagcgttg ... aatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAG
tctcttcatttctacttctataacttcatcatctttatgtaatataatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGCAGTCAAGCCAGTGCAAGAGCATGAGGGACAGCAGCGTGAGCTACGCTT
ctataac putative branch site (score: 3)
atcatctttatgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgttgtgacgatctaactagtgttctctcttcatttctacttctataacttcatcatctttatgtaatataatgttccagATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGCAGTCAAGCCAGTGCAAGAGCATGAGGGACAGCAGCGTGAGCTACGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA