1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agtttgttgagcttgaattatattttgcatcctgtgtgttgatagattgcctttctatttgaatattctatgtatcttacttacaatactgtttttgcagTAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTGTGGATGAAGCTGAACATAGCATGGAAATGCATTTACCCTATCTTTCTAA
species | Oryza sativa |
transcript | LOC_Os08g20270.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAG TAATTGAGGAACTCAACGCTA-AGGAAAATTTGATTTTATEST: gi|88288464|gb|CI661669.1|CI661669
genomic: AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAGgtatgctgct ... gtttttgcagTAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTAT
EST: AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAG TAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAEST: gi|40486364|gb|BX897928.1|BX897928
genomic: AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAGgtatgctgct ... gtttttgcagTAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTA
EST: AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAG TAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTGEST: gi|66917040|gb|CX103888.1|CX103888
genomic: AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAGgtatgctgct ... gtttttgcagTAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTG
EST: AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAG TAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTGEST: gi|33810210|gb|CF330996.1|CF330996
genomic: AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAGgtatgctgct ... gtttttgcagTAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTG
EST: AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAG TAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTGEST: gi|58678103|gb|CK066790.1|CK066790
genomic: AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAGgtatgctgct ... gtttttgcagTAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTG
EST: AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAG TAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTG
genomic: AGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAGgtatgctgct ... gtttttgcagTAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTG
attgcctttctatttgaatattctatgtatcttacttacaatactgtttttgcagTAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTGTGGATGAAGCTGAACATAGCATGGAAATGCATTTACCCTATCTTTCTAA
tacttac putative branch site (score: 1)
ctgttttt putative PPT
tttctatttgaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtttgttgagcttgaattatattttgcatcctgtgtgttgatagattgcctttctatttgaatattctatgtatcttacttacaatactgtttttgcagTAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTGTGGATGAAGCTGAACATAGCATGGAAATGCATTTACCCTATCTTTCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA