1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGACATCTATAGCTTCGGTGTTCTTCTACTGGAAATCGTTAGCGGCAGATGCAACACCAACACAAGATTGCCTTATGAAGATCAATTTCTTCTCGAAAGGgtaagttcccatcatcaaactgtaaacaacaaaatgaactcagtttttttcttctcatataatcaactaaattagaaacttaccaccaaatccaccatacaaagaaacattactgaatgcgagaaaacctgcag
species | Oryza sativa |
transcript | LOC_Os04g52840.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCAACACCAACACAAGATTGCCTTATGAAGATCAATTTCTTCTCGAAAGG ACATGGGTACGCTACGAGCAAGAACGCCTGGCTGAGATCATCGATGCTGACEST: gi|87006990|gb|CI275298.1|CI275298
genomic: GCAACACCAACACAAGATTGCCTTATGAAGATCAATTTCTTCTCGAAAGGgtaagttccc ... aaacctgcagACATGGGTACGCTACGAGCAAGAACGCCTGGCTGAGATCATCGATGCTGAC
EST: GCAACACCAACACAAGATTGCCTTATGAAGATCAATTTCTTCTCGAAAGG ACATGGGTACGCTACGAGCAAGAACGCCTGGCTGAGATCATCGATGCTGACEST: gi|218502591|gb|FG966318.1|FG966318
genomic: GCAACACCAACACAAGATTGCCTTATGAAGATCAATTTCTTCTCGAAAGGgtaagttccc ... aaacctgcagACATGGGTACGCTACGAGCAAGAACGCCTGGCTGAGATCATCGATGCTGAC
EST: GCAACACCAACACAAGATTGCCTTATGAAGATCAATTTCTTCTCGAAAGG ACATGGGTACGCTATGAGCAAGAACGCCTGGCTGAGATCATCGATGCTGAC
genomic: GCAACACCAACACAAGATTGCCTTATGAAGATCAATTTCTTCTCGAAAGGgtaagttccc ... aaacctgcagACATGGGTACGCTACGAGCAAGAACGCCTGGCTGAGATCATCGATGCTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACATCTATAGCTTCGGTGTTCTTCTACTGGAAATCGTTAGCGGCAGATGCAACACCAACACAAGATTGCCTTATGAAGATCAATTTCTTCTCGAAAGGgtaagttcccatcatcaaactgtaaacaacaaaatgaactcagtttttttcttctcatataatcaactaaattagaaacttaccaccaaatccaccatacaaagaaacattactgaatgcgagaaaacctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA