1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagcagcgtttgtatattagcacgcttcttacctgtattgttcaaaacaattcatcattcttacatgcttgagtttgttgttttgttgttccagGTGAACATAGAGTGAAGATATTTTCTTACAGTGAGTTGAGAAAGGCTACCCATGATTTTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGT
species | Oryza sativa |
transcript | LOC_Os04g52840.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGATTGCTGCTTTATGTTCAGNNNNNNNCAACCTGTTGAAGGTGATGATG GTGAACATAGAGTGAAGATATTTTCTTACAGTGAGTTGAGAAAGGCTACCCEST: gi|88376882|gb|CI639207.1|CI639207
genomic: GGATTGCTGCTTTATGTTCAGAAAAAAACAACCTGTTGAAGGTGATGATGgtgagcagcg ... gttgttccagGTGAACATAGAGTGAAGATATTTTCTTACAGTGAGTTGAGAAAGGCTACCC
EST: GGATTGCTGCTTTATGTTCAGNNNNNNNCAACCTGTTGAAGGTGATGATG GTGAACATAGAGTGAAGATATTTTCTTACAGTGAGTTGAGAAAGGCTACCCEST: gi|58655645|gb|CK044325.1|CK044325
genomic: GGATTGCTGCTTTATGTTCAGAAAAAAACAACCTGTTGAAGGTGATGATGgtgagcagcg ... gttgttccagGTGAACATAGAGTGAAGATATTTTCTTACAGTGAGTTGAGAAAGGCTACCC
EST: GGATTGCTGCTTTATGTTCAGNNNNNNNCAACCTGTTGAAGGTGATGATG GTGAACATAGAGTGAAGATATTTTGTTACAGTGAGTTGAGAAAGGCTACCCEST: gi|88468967|gb|CI696979.1|CI696979
genomic: GGATTGCTGCTTTATGTTCAGAAAAAAACAACCTGTTGAAGGTGATGATGgtgagcagcg ... gttgttccagGTGAACATAGAGTGAAGATATTTTCTTACAGTGAGTTGAGAAAGGCTACCC
EST: GGATTGCTGCTTTATGTTCAGNNNNNNNCAACCTGTTGAAGGTGATGATG GTGAACATAGAGTGAAGATATTTTCTTACAGTGAGTTGAGAAAGGCTACCC
genomic: GGATTGCTGCTTTATGTTCAGAAAAAAACAACCTGTTGAAGGTGATGATGgtgagcagcg ... gttgttccagGTGAACATAGAGTGAAGATATTTTCTTACAGTGAGTTGAGAAAGGCTACCC
gttcaaaacaattcatcattcttacatgcttgagtttgttgttttgttgttccagGTGAACATAGAGTGAAGATATTTTCTTACAGTGAGTTGAGAAAGGCTACCCATGATTTTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGT
ttcttac putative branch site (score: 2)
ttttgtt putative PPT
aaacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcagcgtttgtatattagcacgcttcttacctgtattgttcaaaacaattcatcattcttacatgcttgagtttgttgttttgttgttccagGTGAACATAGAGTGAAGATATTTTCTTACAGTGAGTTGAGAAAGGCTACCCATGATTTTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG