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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatatgtcttacattttgttcaccctatcagtgtctcatgcccatagtgtcaaaacaaatcatcttacatttcattttgttaatcagGGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACTTCAAGACAAGGCGTCCGAGAGTTCTTGACTGAACTTACAGCAATTTCTG

Basic information

species Oryza sativa
transcript LOC_Os04g52840.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58596753|gb|CK007281.1|CK007281
EST:     TTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGG                         GGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACT
genomic: TTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGGgtaaatatgt ... tgttaatcagGGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACT
EST: gi|88376882|gb|CI639207.1|CI639207
EST:     TTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGG                         GGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACT
genomic: TTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGGgtaaatatgt ... tgttaatcagGGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACT
EST: gi|58655645|gb|CK044325.1|CK044325
EST:     TTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGG                         GGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACT
genomic: TTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGGgtaaatatgt ... tgttaatcagGGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACT
EST: gi|88468967|gb|CI696979.1|CI696979
EST:     TTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGG                         GGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACT
genomic: TTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGGgtaaatatgt ... tgttaatcagGGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctcatgcccatagtgtcaaaacaaatcatcttacatttcattttgttaatcagGGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACTTCAAGACAAGGCGTCCGAGAGTTCTTGACTGAACTTACAGCAATTTCTG
                             atcttac  putative branch site (score: 3)
                                     tttcatttt  CT-rich tract
                                    atttcattttgttaat  TA-rich tract