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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcataactaaatccaaatttatttactcggtttacatcggaaagttctttcgttctgacttgaaattcacttctgttcagAGGATACCTGGCACCTGAATACGCTATCCGAGGCCAGGTGACAAAGAAATCCGACATCTATAGCTTCGGTGTTCTTCTACTGGAAATCGTTAGCGGCAGA

Basic information

species Oryza sativa
transcript LOC_Os04g52840.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38482100|gb|CF966158.1|CF966158
EST:     CTCCTTCCACCCAACGCAACTCATGGGAGCACCCGAGTTGCAGGCACATG                         AGGATACCTGGCACCTGAATACGCTATCCGAGGCCAGGTGACAAAGAAATC
genomic: CTCCTTCCACCCAACGCAACTCATGTGAGCACCCGAGTTGCAGGCACATTgtaagcataa ... ttctgttcagAGGATACCTGGCACCTGAATACGCTATCCGAGGCCAGGTGACAAAGAAATC
EST: gi|87006990|gb|CI275298.1|CI275298
EST:     TCCTTCCCACCCAACGCAACTCATGTGAGCACCCGAGTTGCAGGCACATT                         AGGATACCTGGCACCTGAATACGCTATCCGAGGCCAGGTGACAAAGAAATC
genomic: TCCTT-CCACCCAACGCAACTCATGTGAGCACCCGAGTTGCAGGCACATTgtaagcataa ... ttctgttcagAGGATACCTGGCACCTGAATACGCTATCCGAGGCCAGGTGACAAAGAAATC
EST: gi|66917361|gb|CX104209.1|CX104209
EST:     CTCCTTCCACCCAACGCAACTCATGTGAGCACCCGAGTTGCAGGCACATT                         AAGATACCTGGCACCTGAAT
genomic: CTCCTTCCACCCAACGCAACTCATGTGAGCACCCGAGTTGCAGGCACATTgtaagcataa ... ttctgttcagAGGATACCTGGCACCTGAAT
EST: gi|218502591|gb|FG966318.1|FG966318
EST:     CTCCTTCCACCCAACGCAACTCATGTGAGCACCCGAGTTGCAGGCACATT                         AGGATACCTGGCACCTGAATACGCTATCCGAGGCCAGGTGACAAAGAAATC
genomic: CTCCTTCCACCCAACGCAACTCATGTGAGCACCCGAGTTGCAGGCACATTgtaagcataa ... ttctgttcagAGGATACCTGGCACCTGAATACGCTATCCGAGGCCAGGTGACAAAGAAATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcggtttacatcggaaagttctttcgttctgacttgaaattcacttctgttcagAGGATACCTGGCACCTGAATACGCTATCCGAGGCCAGGTGACAAAGAAATCCGACATCTATAGCTTCGGTGTTCTTCTACTGGAAATCGTTAGCGGCAGA
                           ttctgac  putative branch site (score: 2)
                                        ttcacttct  putative PPT
                                  ttgaaatt  TA-rich tract