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...attaacttgctaagagtcctgtacacctcattttacgttagtttattgttgcaatatgaatttacagttgttctgatggctatttacctttgctctgcagAAATTCTTTCCAATTCATTGCTTCTTGTGGCCTGTGGGCACCTCTACAATTTGATTTCAGATGGATTGCTGCTTTATGTTCAGAAAAAAACAACCTGTTG
species | Oryza sativa |
transcript | LOC_Os04g52840.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCTGCTTGCTTTGCTCTCACTGCCGGGGCTCGATCTGCTTGCTCTGCAG AAATTCTTTCCAATTCATTGCTTCTTGTGGCCTGTGGGCACCTCTACAATTEST: gi|88376882|gb|CI639207.1|CI639207
genomic: AGCTGCTTGCTTTGCTCTCACTGCCGGGGCTCGATCTGCTTGCTCTGCAGgtgattcttg ... tgctctgcagAAATTCTTTCCAATTCATTGCTTCTTGTGGCCTGTGGGCACCTCTACAATT
EST: AGCTGCTTGCTTTGCTCTCACTGCCGGGGCTCGATCTGCTTGCTCTGCAG AAATTCTTTCCAATTCATTGCTTCTTGTGGCCTGTGGGCACCTCTACAATTEST: gi|58655645|gb|CK044325.1|CK044325
genomic: AGCTGCTTGCTTTGCTCTCACTGCCGGGGCTCGATCTGCTTGCTCTGCAGgtgattcttg ... tgctctgcagAAATTCTTTCCAATTCATTGCTTCTTGTGGCCTGTGGGCACCTCTACAATT
EST: AGCTGCTTGCTTTGCTCTCACTGCCGGGGCTCGATCTGCTTGCTCTGCAG AAATTCTTTCCAATTCATTGCTTCTTGTGGCCTGTGGGCACCTCTACAATTEST: gi|88468967|gb|CI696979.1|CI696979
genomic: AGCTGCTTGCTTTGCTCTCACTGCCGGGGCTCGATCTGCTTGCTCTGCAGgtgattcttg ... tgctctgcagAAATTCTTTCCAATTCATTGCTTCTTGTGGCCTGTGGGCACCTCTACAATT
EST: AGCTGCTTGCTTTGCTCTCACTGCCGGGGCTCGATCTGCTTGCTCTGCAG AAATTCTTTCCAATTCATTGCTTCTTGTGGCCTGTGGGCACCTCTACAATT
genomic: AGCTGCTTGCTTTGCTCTCACTGCCGGGGCTCGATCTGCTTGCTCTGCAGgtgattcttg ... tgctctgcagAAATTCTTTCCAATTCATTGCTTCTTGTGGCCTGTGGGCACCTCTACAATT
ttgttgcaatatgaatttacagttgttctgatggctatttacctttgctctgcagAAATTCTTTCCAATTCATTGCTTCTTGTGGCCTGTGGGCACCTCTACAATTTGATTTCAGATGGATTGCTGCTTTATGTTCAGAAAAAAACAACCTGTTG
ttctgat putative branch site (score: 16)
tttacctttgctct putative PPT
aatatgaatttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaacttgctaagagtcctgtacacctcattttacgttagtttattgttgcaatatgaatttacagttgttctgatggctatttacctttgctctgcagAAATTCTTTCCAATTCATTGCTTCTTGTGGCCTGTGGGCACCTCTACAATTTGATTTCAGATGGATTGCTGCTTTATGTTCAGAAAAAAACAACCTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - -cttgcta
- - - - - - - - -cctgtac
- - - - - - - - - - - - - - - - - - - - - - -ttgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatgg