1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTCATGATTACAATCTTCCATCCTTTCTTCTTAACTCGGGTTACTTCACTGGTAAGAGAAAGGCTGAATCTGAAGTCCTCTCCAAATACCCAACCTCAGgttagactatatttatgcctccaaaaaaactcactttacatttttgtcatgtttctaatctatatttttttaatcag
species | Oryza sativa |
transcript | LOC_Os04g33060.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGGTAAGAGAAAGGCTGAATCTGAAGTCCTCTCCAAATACCCAACCTCAG GTGTTGTACTGAGGCCTGGTTTCATTTATGGTAAAAGGAAAGTAGATGGTTEST: gi|29657208|gb|CB653483.1|CB653483
genomic: TGGTAAGAGAAAGGCTGAATCTGAAGTCCTCTCCAAATACCCAACCTCAGgttagactat ... ttttaatcagGTGTTGTACTGAGGCCTGGTTTCATTTATGGTAAAAGGAAAGTAGATGGTT
EST: TGGTAAGAGAAAGGCTGAATCTGAAGTCCTCTCCAAATACCCAACCTCAG GTGTTGTACTGAGGCCTGGTTTCATTTATGGTAAAAGGAAAGTAGATGGTTEST: gi|88527778|gb|CI455961.1|CI455961
genomic: TGGTAAGAGAAAGGCTGAATCTGAAGTCCTCTCCAAATACCCAACCTCAGgttagactat ... ttttaatcagGTGTTGTACTGAGGCCTGGTTTCATTTATGGTAAAAGGAAAGTAGATGGTT
EST: TCCTCTCCAAATACCCAACCTCAGG GTGTTGTACTGAGGCCTGGTTTCATTTATGGTAAAAGGAAAGTAGATGGTEST: gi|86261557|gb|CI017299.1|CI017299
genomic: TCCTCTCCAAATACCCAACCTCA-Ggttagactat ... ttttaatcagGTGTTGTACTGAGGCCTGGTTTCATTTATGGTAAAAGGAAAGTAGATGGT
EST: TGGTAAGAGAAAGGCTGAATCTGAAGTCCTCTCCAAATACCCAACCTCAG GTGTTGTACTGAGGCCTGGTTTCATTTATGGTAAAAGGAAAGTAGATGGTTEST: gi|29687807|gb|CB684082.1|CB684082
genomic: TGGTAAGAGAAAGGCTGAATCTGAAGTCCTCTCCAAATACCCAACCTCAGgttagactat ... ttttaatcagGTGTTGTACTGAGGCCTGGTTTCATTTATGGTAAAAGGAAAGTAGATGGTT
EST: TGGTAAGAGAAAGGCTGAATCTGAAGTCCTCTCCAAATACCCAACCTCAG GTGTTGTACTGAGGCCTGGTTTCATTTATGGTAAAAGGAAAGTAGATGGTTEST: gi|89161982|gb|CI102330.1|CI102330
genomic: TGGTAAGAGAAAGGCTGAATCTGAAGTCCTCTCCAAATACCCAACCTCAGgttagactat ... ttttaatcagGTGTTGTACTGAGGCCTGGTTTCATTTATGGTAAAAGGAAAGTAGATGGTT
EST: CAAATACCCAACCTCAG GTGTTGTACTGAGGCCTGGTTTCATTTATGGTAAAAGGAAAGTAGATGGTT
genomic: CAAATACCCAACCTCAGgttagactat ... ttttaatcagGTGTTGTACTGAGGCCTGGTTTCATTTATGGTAAAAGGAAAGTAGATGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCATGATTACAATCTTCCATCCTTTCTTCTTAACTCGGGTTACTTCACTGGTAAGAGAAAGGCTGAATCTGAAGTCCTCTCCAAATACCCAACCTCAGgttagactatatttatgcctccaaaaaaactcactttacatttttgtcatgtttctaatctatatttttttaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG