1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtgtgagtccgagaaaaaaaagagaacatgtatatactatatatctgactaccaaatctgcgttctgtcacatttgcttcacagtgtgtgttcatggcagGTCAGGGAGACCATCTTACTCTGATCCTTGGGTTGATCAAGTTACTTGGCTAGCAG
species | Oryza sativa |
transcript | LOC_Os04g33060.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCTGCAAAGCTGCTGTCTCTAAGGGTATTGAGGTTGTGAGCCTCAGCAG GTCAGGGAGACCATCTTACTCTGATCCTTGGGTTGATCAAGTTACTTGGCTEST: gi|29687806|gb|CB684081.1|CB684081
genomic: ATCTGCAAAGCTGCTGTCTCTAAGGGTATTGAGGTTGTGAGCCTCAGCAGgtaccacaac ... ttcatggcagGTCAGGGAGACCATCTTACTCTGATCCTTGGGTTGATCAAGTTACTTGGCT
EST: ATCTGCAAAGCTGCTGTCTCTAAGGGTATTGAGGTTGTGAGCCTCAGCAG GTCAGGGAGACCATCTTACTCTGATCCTTGGGTTGATCAAGTTACTTGGCTEST: gi|29687807|gb|CB684082.1|CB684082
genomic: ATCTGCAAAGCTGCTGTCTCTAAGGGTATTGAGGTTGTGAGCCTCAGCAGgtaccacaac ... ttcatggcagGTCAGGGAGACCATCTTACTCTGATCCTTGGGTTGATCAAGTTACTTGGCT
EST: GCAAAGCTGCTGTCTCTAAGGGTATTGAGGTTGTGAGCCTCAGCAG GTCAGGGAGACCATCTTACTCTGATCCTTGGGTTGATCAAGTTACTTGGCT
genomic: GCAAAGCTGCTGTCTCTAAGGGTATTGAGGTTGTGAGCCTCAGCAGgtaccacaac ... ttcatggcagGTCAGGGAGACCATCTTACTCTGATCCTTGGGTTGATCAAGTTACTTGGCT
tgactaccaaatctgcgttctgtcacatttgcttcacagtgtgtgttcatggcagGTCAGGGAGACCATCTTACTCTGATCCTTGGGTTGATCAAGTTACTTGGCTAGCAG
atctgac putative branch site (score: 67)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgagtccgagaaaaaaaagagaacatgtatatactatatatctgactaccaaatctgcgttctgtcacatttgcttcacagtgtgtgttcatggcagGTCAGGGAGACCATCTTACTCTGATCCTTGGGTTGATCAAGTTACTTGGCTAGCAG
- - - - - - -aaaaaaa
- - - - - - - - - - - - - catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - accaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgttctg