1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCTGTTGTGTCTACCCTTGGAGGATTCGGTAATGAAGAACAGATGAAAAGGATAAACGGTGAGGCAAATGTAACAGCAGTAGATGCTGCAAAAGAATTTGgtaagtaccgcattatgacagtggtgtgccaatttgtttgcatatgcatatgacatcaggtgcatattatgcaattccatgcttaacctaagtttctttg...
species | Oryza sativa |
transcript | LOC_Os04g33060.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GATAAACGGTGAGGCAAATGTAACAGCAGTAGATGCTGCAAAAGAATTTG GAATCCCCAAATTCATTTTAATTTCTGTTCATGATTACAATCTTCCATCCTEST: gi|29657207|gb|CB653482.1|CB653482
genomic: GATAAACGGTGAGGCAAATGTAACAGCAGTAGATGCTGCAAAAGAATTTGgtaagtaccg ... tcttctgcagGAATCCCCAAATTCATTTTAATTTCTGTTCATGATTACAATCTTCCATCCT
EST: GATAAACGGTGAGGCAAATGTAACAGCAGTAGATGCTGCAAAAGAATTTG GAATCCCCACATTCATTTTAATTTCTGTTCATGATTACAATCTTCCATCCTEST: gi|29657208|gb|CB653483.1|CB653483
genomic: GATAAACGGTGAGGCAAATGTAACAGCAGTAGATGCTGCAAAAGAATTTGgtaagtaccg ... tcttctgcagGAATCCCCAAATTCATTTTAATTTCTGTTCATGATTACAATCTTCCATCCT
EST: GATAAACGGTGAGGCAAATGTAACAGCAGTAGATGCTGCAAAAGAATTTG GAATCCCCAAATTCATTTTAATTTCTGTTCATGATTACAATCTTCCATCCTEST: gi|29687806|gb|CB684081.1|CB684081
genomic: GATAAACGGTGAGGCAAATGTAACAGCAGTAGATGCTGCAAAAGAATTTGgtaagtaccg ... tcttctgcagGAATCCCCAAATTCATTTTAATTTCTGTTCATGATTACAATCTTCCATCCT
EST: GATAAACGGTGAGGCAAATGTAACAGCAGTAGATGCTGCAAAAGAATTTG GAATCCCCAAATTCATTTTAATTTCTGTTCATGATTACAATCTTCCATCCTEST: gi|29687807|gb|CB684082.1|CB684082
genomic: GATAAACGGTGAGGCAAATGTAACAGCAGTAGATGCTGCAAAAGAATTTGgtaagtaccg ... tcttctgcagGAATCCCCAAATTCATTTTAATTTCTGTTCATGATTACAATCTTCCATCCT
EST: GATAAACGGTGAGGCAAATGTAACAGCAGTAGATGCTGCAAAAGAATTTG GAATCCCCAAATTCATTTTAATTTCTGTTCATGATTACAATCTTCCATCCT
genomic: GATAAACGGTGAGGCAAATGTAACAGCAGTAGATGCTGCAAAAGAATTTGgtaagtaccg ... tcttctgcagGAATCCCCAAATTCATTTTAATTTCTGTTCATGATTACAATCTTCCATCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGTTGTGTCTACCCTTGGAGGATTCGGTAATGAAGAACAGATGAAAAGGATAAACGGTGAGGCAAATGTAACAGCAGTAGATGCTGCAAAAGAATTTGgtaagtaccgcattatgacagtggtgtgccaatttgtttgcatatgcatatgacatcaggtgcatattatgcaattccatgcttaacctaagtttctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA