1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gcatgaacctgagcagctgaaattctatatcttgcttgttaggtagtgccgttttactccctcccccaacattctgaagcgtttctcgatgtcttgcagATTGTGGTGTTGGGAGGGAGTGGATTCGTTGGCTCTGCTATCTGCAAAGCTGCTGTCTCTAAGGGTATTGAGGTTGTGAGCCTCAGCAG
species | Oryza sativa |
transcript | LOC_Os04g33060.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGACTACTCCACTCCGATTGACGTCGTTGCCGATGTGAAAACCGAGAAG ATTGTGGTGTTGGGAGGGAGTGGATTCGTTGGCTCTGCTATCTGCAAAGCTEST: gi|29687806|gb|CB684081.1|CB684081
genomic: AAGACTACTCCACTCCGATTGACGTCGTTGCCGATGTGAAAACCGAGAAGgcatgaacct ... tgtcttgcagATTGTGGTGTTGGGAGGGAGTGGATTCGTTGGCTCTGCTATCTGCAAAGCT
EST: AAGACTACTCCACTCCGATTGACGTCGTTGCCGATGTGAAAACCGAGAAG ATTGTGGTGTTGGGAGGGAGTGGATTCGTTGGCTCTGCTATCTGCAAAGCTEST: gi|88694533|gb|CI738571.1|CI738571
genomic: AAGACTACTCCACTCCGATTGACGTCGTTGCCGATGTGAAAACCGAGAAGgcatgaacct ... tgtcttgcagATTGTGGTGTTGGGAGGGAGTGGATTCGTTGGCTCTGCTATCTGCAAAGCT
EST: AAGACTACTCCACTCCGATTGACGTCGTTGCCGATGTGAAAACCGAGAAG ATTGTGGTGTTGGGAGGGAGTGGATTCGT
genomic: AAGACTACTCCACTCCGATTGACGTCGTTGCCGATGTGAAAACCGAGAAGgcatgaacct ... tgtcttgcagATTGTGGTGTTGGGAGGGAGTGGATTCGT
agtgccgttttactccctcccccaacattctgaagcgtttctcgatgtcttgcagATTGTGGTGTTGGGAGGGAGTGGATTCGTTGGCTCTGCTATCTGCAAAGCTGCTGTCTCTAAGGGTATTGAGGTTGTGAGCCTCAGCAG
ttttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgaacctgagcagctgaaattctatatcttgcttgttaggtagtgccgttttactccctcccccaacattctgaagcgtttctcgatgtcttgcagATTGTGGTGTTGGGAGGGAGTGGATTCGTTGGCTCTGCTATCTGCAAAGCTGCTGTCTCTAAGGGTATTGAGGTTGTGAGCCTCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT