Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAGgtaaccttccttctcatccgtatgtggtagtattttcaaggtcacatgaacattaaatatgaaatcaggtatatacagaaaacatctcgtattgactgtc...

Basic information

species Oryza sativa
transcript LOC_Os02g53210.3
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g53210.3 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G046407_T01 (Zea mays), 5'ss of exon 7
ATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAGgtaaccttccttctc--atccgtatgtggtagta----ttttcaaggtcacatgaacattaaatatgaaatcaggtatatacagaaaacatctcgtattgactgtc
|||||||||||  | || |||||| ||||||||||||||||||||||||||||||| || ||||| || || |||||   ||  |  ||  |  | | ||      ||    ||   ||| ||  | |||||||||||   ||||||     | ||        | |  | | || |   
ATTTTCCGTGCACTACGGAGCATTTTGTATGGTTTTGTTGCCTTCTTTTCAACATGTAATAGGCACCGACTCAGgtattttttttattccaacacctgtgcaacgatacagtttagtaagatccgaggaacattaaatg-aaaatcacaatgacaccttg---gtttactgtggagtt--

upper sequence: LOC_Os02g53210.3 (Oryza sativa), 5'ss of exon 8
lower sequence: Vv12s0059g01300.t01 (Vitis vinifera), 5'ss of exon 8
ATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAGgta-------accttccttctcatccgtatgtgg---tagtattttcaaggtcacatgaacattaaatatgaaatcaggtatatacagaaaacatctcgtattgactgtc
 ||||||| ||  || |||||||| |  ||||||| |||||||||||  || | |||||||| ||||||||||||||       |  ||  || || |  | || |     |   ||  | |   |    ||     | | | |    | |  | |  |   |||| || || ||         
GTTTTCCGGGCTGTTAGAAGCATTTTAAATGGTTTCGTTGCCTTCTTCACAGCCTGCAACAGACATCGGCTTAGgtatgctataattttatttttcctttgcatttcaatctgccatagttatttttgtctgtctgctcattttcttcttaatttttaatgaaaaatatatc-ta---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58600474|gb|CK011002.1|CK011002
EST:     CTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAG                         CATTTACAAGCACATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAAC
genomic: CTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAGgtaaccttcc ... catgctgcagCATTTACAACCACATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAAC
EST: gi|33692950|gb|CF321189.1|CF321189
EST:     CTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAG                         CATTTACAACCACATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAAC
genomic: CTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAGgtaaccttcc ... catgctgcagCATTTACAACCACATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAAC