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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTAGGCGGCGTATTTACCCCACCGGGGGTGGCCATTAACTCTGGCCACCTTGGCATGCGGATAGGCATCACCATGGGATGCCTCTGACCTCTGCGCAGgtattcgacgagatacctctgcaaatttttgcttgcgcctttgcctggattttgtggtggcctctgatctcccgtttgatgtggaattttttgcgtgttttcgcgtatgtggttcag

Basic information

species Oryza sativa
transcript LOC_Os02g53210.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29621684|gb|CB626695.1|CB626695
EST:     CTTGGCATGCGGATAGGCATCACCATGGGATGCCTCTGACCTCTGCGCAG                         GGAGGTGGTGGAGTCGGCGTGATGGAGAGCGGCGTGAAGCGGCATTTCTTC
genomic: CTTGGCATGCGGATAGGCATCACCATGGGATGCCTCTGACCTCTGCGCAGgtattcgacg ... tgtggttcagGGAGGTGGTGGAGTCGGCGTGATGGAGAGCGGCGGGAAGCGGCATTTCTTC
EST: gi|218503370|gb|FG964055.1|FG964055
EST:     TTGGCATGCGGATAGGCATCACCATGGGGATGCCTCTGACCTCTGCGCAG                         GGAGGTGGTGGAGTCGGCGTGATGGAGAGCGGCGTGAAGCGGCATTTCTTC
genomic: TTGGCATGCGGATAGGCATCACCAT-GGGATGCCTCTGACCTCTGCGCAGgtattcgacg ... tgtggttcagGGAGGTGGTGGAGTCGGCGTGATGGAGAGCGGCGGGAAGCGGCATTTCTTC
EST: gi|58595254|gb|CF993562.1|CF993562
EST:     CTTGGCATGCGGATAGGCATCACCATGGGATGCCTCTGACCTCTGCGCAG                         GGAGGTGGTGGAGTCGGCGTGATGGAGAGCGGCGTGAAGCGGCATTTCTTC
genomic: CTTGGCATGCGGATAGGCATCACCATGGGATGCCTCTGACCTCTGCGCAGgtattcgacg ... tgtggttcagGGAGGTGGTGGAGTCGGCGTGATGGAGAGCGGCGGGAAGCGGCATTTCTTC