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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTCATACGAAGAAGTTTCTCATATTGCTTGATAACCGGCCATGGCTGCAAGACCAGGACACAAAACCTGCTCACCTGTGGCAATTGATGGTCACAAAGgtatgctttactgttttacgagccacttgtaagcacacaaacgagtacttatgaatatttgttcattgcttacactttcatgtattgcccttgttacatcgattctggctcgtcttacttgttgacttcttgtcattttttgctccag

Basic information

species Oryza sativa
transcript LOC_Os02g53210.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g53210.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G046407_T01 (Zea mays), 5'ss of exon 2
CCCTCATACGAAGAAGTTTCTCATATTGCTTGATAACCGGCCATGGCTGCAAGACCAGGACACAAAACCTGCTCACCTGTGGCAATTGATGGTCACAAAGgtatgctttactgttttacgagccacttgtaagcacacaaacgagtacttatgaatatttgttcattgcttacactttcatgtattgcccttgttacatcgattctggctcgtcttacttgttgacttcttgtcattttttgctccag
||||||||| |||||||| || |||||||| || || || |||||| ||| ||| ||||| |||||||||||||| || |||||||||||||| || |||||        ||||| | |  ||  ||| || ||||||  | |          | ||| | ||  |||||||   ||   |||  |||   |   | |  |||||| ||| || ||  || |||   ||  |                
CCCTCATACCAAGAAGTTCCTTATATTGCTCGACAATCGCCCATGGTTGCTAGATCAGGATACAAAACCTGCTCATCTATGGCAATTGATGGTTACTAAGgt--------ctgttgttctcgctgctt-tatgcacacctatggc--------agtatctctttcttgcttaagtttcactgtgatgc---taacaaactgattcttgct-gtttttttttttg--ctccag----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29674941|gb|CB671216.1|CB671216
EST:     AAGACCAGGACACAAAACCTGCTCACCTGTGGCAATTGATGGTCACAAAG                         TCAAGACTTTCACCTTTTGCAAACACTAGAACTAGGAGAAAGGGAGATGAA
genomic: AAGACCAGGACACAAAACCTGCTCACCTGTGGCAATTGATGGTCACAAAGgtatgcttta ... tttgctccagTCAAGACTTTCACCTTTTGCAAACACTAGAACTAGGAGAAAGGGAGATGAA
EST: gi|29621685|gb|CB626696.1|CB626696
EST:     AAGACCAGGACACAAAACCTGCTCACCTGTGGCAATTGATGGTCACAAAG                         TCAAGACTTTCACCTTTTGCAAACACTAGAACTAGGAGAAAGGGAGATGAA
genomic: AAGACCAGGACACAAAACCTGCTCACCTGTGGCAATTGATGGTCACAAAGgtatgcttta ... tttgctccagTCAAGACTTTCACCTTTTGCAAACACTAGAACTAGGAGAAAGGGAGATGAA
EST: gi|29621684|gb|CB626695.1|CB626695
EST:     AAGACCAGGACACAAAACCTGCTCACCTGTGGCAATTGATGGTCACAAAG                         TCAAGACTTTCACCTTTTGCAAACACTATAACTAGGAGAAAGGGAGATGAA
genomic: AAGACCAGGACACAAAACCTGCTCACCTGTGGCAATTGATGGTCACAAAGgtatgcttta ... tttgctccagTCAAGACTTTCACCTTTTGCAAACACTAGAACTAGGAGAAAGGGAGATGAA
EST: gi|218503370|gb|FG964055.1|FG964055
EST:     AAGACCAGGACACAAAACCTGCTCACCTGTGGCAATTGATGGTCACAAAG                         TCAAGACTTTCACCTTTTGCAAACACTAGAACTAGGAGAAAGGGAGATGAA
genomic: AAGACCAGGACACAAAACCTGCTCACCTGTGGCAATTGATGGTCACAAAGgtatgcttta ... tttgctccagTCAAGACTTTCACCTTTTGCAAACACTAGAACTAGGAGAAAGGGAGATGAA
EST: gi|58595254|gb|CF993562.1|CF993562
EST:     AAGACCAGGACACAAAACCTGCTCACCTGTGGCAATTGATGGTCACAAAG                         TCAAGACTTTCACCTTTTGCAAACACTAGAACTAGGAGAAAGGGAGATGAA
genomic: AAGACCAGGACACAAAACCTGCTCACCTGTGGCAATTGATGGTCACAAAGgtatgcttta ... tttgctccagTCAAGACTTTCACCTTTTGCAAACACTAGAACTAGGAGAAAGGGAGATGAA