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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaggcatgaatgtgctctccattcttctctgctgcatgtgcagaccacttatatgcttgctgtacagGAAATGTGTTTTATGACGCTCAGAATTATTTCTCAACACCTGAAGGGGACAGTGAGAATGTACAGAGTGATGATGACGATTCTGGACCTAGTCAATGCAT

Basic information

species Oryza sativa
transcript LOC_Os02g53210.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29674941|gb|CB671216.1|CB671216
EST:     CTCTGAATGCCAGCTCCTACAGGATTATTTGAACAGCATCTCTCCTAAAG                         GAAATGTGTTTTATGACGCTCAGAATTATTTCTCAACACCTGAAGGGGACA
genomic: CTCTGAATGCCAGCTCCTACAGGATTATTTGAACAGCATCTCTCCTAAAGgtaaaggcat ... tgctgtacagGAAATGTGTTTTATGACGCTCAGAATTATTTCTCAACACCTGAAGGGGACA
EST: gi|29665378|gb|CB661653.1|CB661653
EST:     CTCTGAATGCCAGCTCCTACAGGATTATTTGAACAGCATCTCTCCTAAAG                         GAAATGTGTTTTATGACGCTCAGAATTATTTCTCAACACCTGAAGGGGACA
genomic: CTCTGAATGCCAGCTCCTACAGGATTATTTGAACAGCATCTCTCCTAAAGgtaaaggcat ... tgctgtacagGAAATGTGTTTTATGACGCTCAGAATTATTTCTCAACACCTGAAGGGGACA
EST: gi|33678235|gb|CF306474.1|CF306474
EST:     CTCTGAATGCCAGCTCCTACAGGATTATTTGAACAGCATCTCTCCTAAAG                         GAAATGTGTTTTATGACGCTCAGAATTATTTCTCAACACCTGAAGGGGACA
genomic: CTCTGAATGCCAGCTCCTACAGGATTATTTGAACAGCATCTCTCCTAAAGgtaaaggcat ... tgctgtacagGAAATGTGTTTTATGACGCTCAGAATTATTTCTCAACACCTGAAGGGGACA
EST: gi|29621685|gb|CB626696.1|CB626696
EST:     CTCTGAATGCCAGCTCCTACAGGATTATTTGAACAGCATCTCTCCTAAAG                         GAAATGTGTTTTATGACGCTCAGAATTATTTCTCAACACCTGAAGGGGACA
genomic: CTCTGAATGCCAGCTCCTACAGGATTATTTGAACAGCATCTCTCCTAAAGgtaaaggcat ... tgctgtacagGAAATGTGTTTTATGACGCTCAGAATTATTTCTCAACACCTGAAGGGGACA
EST: gi|29631129|gb|CB636138.1|CB636138
EST:     CTCTGAATGCCAGCTCCTACAGGATTATTTGAACAGCATCTCTCCTAAAG                         GAAATGTGTTTTATGACGCTCAGAATTATTTCTCAACACCTGAAGGGGACA
genomic: CTCTGAATGCCAGCTCCTACAGGATTATTTGAACAGCATCTCTCCTAAAGgtaaaggcat ... tgctgtacagGAAATGTGTTTTATGACGCTCAGAATTATTTCTCAACACCTGAAGGGGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctctccattcttctctgctgcatgtgcagaccacttatatgcttgctgtacagGAAATGTGTTTTATGACGCTCAGAATTATTTCTCAACACCTGAAGGGGACAGTGAGAATGTACAGAGTGATGATGACGATTCTGGACCTAGTCAATGCAT
                                  acttatat  TA-rich tract