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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaaaaatatgttgatgcggccagtaattatattaggaaataggatatatggaacttactttgactttctttttcagATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAG

Basic information

species Oryza sativa
transcript LOC_Os02g53210.3
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g53210.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G046407_T01 (Zea mays), 3'ss of exon 6
gtaacaaaaatatgttgatgcggccagtaattatattaggaaataggatatatggaacttactttgactttctttttc----agATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAG
||| || || |  ||||   | |  |  ||  ||||    || |   || ||||  |||||||||||| || | ||||    |||||||||||||  | || |||||| ||||||||||||||||||||||||||||||| || ||||| || || ||
gtatcagaagttcgttggcacaggta--aagcatatgtaaaact---atctatgacacttactttgaccttttctttctttcagATTTTCCGTGCACTACGGAGCATTTTGTATGGTTTTGTTGCCTTCTTTTCAACATGTAATAGGCACCGACTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58600474|gb|CK011002.1|CK011002
EST:     CATCTGAAACTACCATCTGGGGGTCACTATGGAAAGATCTTCTGTACCAG                         ATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCA
genomic: CATCTGAAACTACCATCTGGGGGTCACTATGGAAAGATCTTCTGTACCAGgtaacaaaaa ... tctttttcagATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCA
EST: gi|33692950|gb|CF321189.1|CF321189
EST:     CATCTGAAACTACCATCTGGGGGTCACTATGGAAAGATCTTCTGTACCAG                         ATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCA
genomic: CATCTGAAACTACCATCTGGGGGTCACTATGGAAAGATCTTCTGTACCAGgtaacaaaaa ... tctttttcagATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtaattatattaggaaataggatatatggaacttactttgactttctttttcagATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAG
                                cttactttgactttct  CT-rich tract
     ttatattaggaaata  TA-rich tract