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GAATTAATGCTGAACAAGGACCAGTCAATTCAACTTGAGGCTGATGATGGgtaaaatcacctcttccacttttttttataaaaaatagctattcaagtcccttggaaattttatctacacgtctctgctcccatataaagggtctttgat...
species | Oryza sativa |
transcript | LOC_Os01g67250.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAATTAATGCTGAACAAGGACCAGTCAATTCAACTTGAGGCTGATGATGG CATTATTATTCAAGGTCGATCAGCAGTTCATCCTACCGATATGGAAGTTGAEST: gi|29630217|gb|CB635226.1|CB635226
genomic: GAATTAATGCTGAACAAGGACCAGTCAATTCAACTTGAGGCTGATGATGGgtaaaatcac ... ctctcttcagCATTATTATTCAAGGTCGATCAGCAGTTCATCCTACCGATATGGAAGTTGA
EST: GAATTAATGCTGAACAAGGACCAGTCAATTCAACTTGAGGCTGATGATGG CATTATTATTCAAGGTCGATCAGCAGTTCATCCTACCGATATGGAAGTTGAEST: gi|29678404|gb|CB674679.1|CB674679
genomic: GAATTAATGCTGAACAAGGACCAGTCAATTCAACTTGAGGCTGATGATGGgtaaaatcac ... ctctcttcagCATTATTATTCAAGGTCGATCAGCAGTTCATCCTACCGATATGGAAGTTGA
EST: GAATTAATGCTGAACAAGGACCAGTCAATTCAACTTGAGGCTGATGATGG CATTATTATTCAAGGTCGATCAGCAGTTCATCCTACCGATATGGAAGTTGA
genomic: GAATTAATGCTGAACAAGGACCAGTCAATTCAACTTGAGGCTGATGATGGgtaaaatcac ... ctctcttcagCATTATTATTCAAGGTCGATCAGCAGTTCATCCTACCGATATGGAAGTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATTAATGCTGAACAAGGACCAGTCAATTCAACTTGAGGCTGATGATGGgtaaaatcacctcttccacttttttttataaaaaatagctattcaagtcccttggaaattttatctacacgtctctgctcccatataaagggtctttgat
- - - ATGCTG
- - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgctccc