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GCCAAGAAGGGGCCCCTCGGGACCATATGGATCGCGGCGCATTTGGAGCGGAAGCTGCGGAAGAATCAGGTCGCGGATACGGATATCGGCGTCTCCGTAGgtgggtgattttgctgtttcacaagcttttttcttttcggatctactaccatttttttttgtttctgttcgagcatgttagggcctcacacgtagactgc...
species | Oryza sativa |
transcript | LOC_Os01g67250.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAAGCTGCGGAAGAATCAGGTCGCGGATACGGATATCGGCGTCTCCGTAG ATTCAATTATATTCCCTGAAGTTCCGATTGCACTTCGATTATCAAGCCATCEST: gi|88576761|gb|CI673286.1|CI673286
genomic: GAAGCTGCGGAAGAATCAGGTCGCGGATACGGATATCGGCGTCTCCGTAGgtgggtgatt ... tttcctgcagATTCAATTATATTCCCTGAAGTTCCGATTGCACTTCGATTATCAAGCCATC
EST: GAAGCTGCGGAAGAATCAGGTCGCGGATACGGATATCGGCGTCTCCGTAC ATTCAATTATATTCCCTGAAGTTCCGATTGCANTTCGATCATCAAGCCATCEST: gi|88583301|gb|CI700772.1|CI700772
genomic: GAAGCTGCGGAAGAATCAGGTCGCGGATACGGATATCGGCGTCTCCGTAGgtgggtgatt ... tttcctgcagATTCAATTATATTCCCTGAAGTTCCGATTGCACTTCGATTATCAAGCCATC
EST: GAAGCTGCGGAAGAATCAGGTCGCGGATACGGATATCGGCGTCTCCGTAG ATTCAATTATATTCCCTGAAGTTCCGATTGCACTTCGATTATCAAGCCATCEST: gi|29630217|gb|CB635226.1|CB635226
genomic: GAAGCTGCGGAAGAATCAGGTCGCGGATACGGATATCGGCGTCTCCGTAGgtgggtgatt ... tttcctgcagATTCAATTATATTCCCTGAAGTTCCGATTGCACTTCGATTATCAAGCCATC
EST: GAAGCTGCGGAAGAATCAGGTCGCGGATACGGATATCGGCGTCTCCGTAG ATTCAATTATATTCCCTGAAGTTCCGATTGCACTTCGATTATCAAGCCATCEST: gi|88429094|gb|CI689974.1|CI689974
genomic: GAAGCTGCGGAAGAATCAGGTCGCGGATACGGATATCGGCGTCTCCGTAGgtgggtgatt ... tttcctgcagATTCAATTATATTCCCTGAAGTTCCGATTGCACTTCGATTATCAAGCCATC
EST: GAAGCTGCGGAAGAATCAGGTCGCGGATACGGATATCGGCGTCTCCGTAG ATTCAATTATATTCCCTGAAGTTCCGATTGCACTTCGATTATCACGCCATCEST: gi|88588063|gb|CI705856.1|CI705856
genomic: GAAGCTGCGGAAGAATCAGGTCGCGGATACGGATATCGGCGTCTCCGTAGgtgggtgatt ... tttcctgcagATTCAATTATATTCCCTGAAGTTCCGATTGCACTTCGATTATCAAGCCATC
EST: GAAGCTGCGGAACAATCAGGTCGCGGATACGGATATCGGCGTCTCCGTAG ATTCAATTATATTCCCTGAAGTTCCGATTGCACTTCGATTATCAAGCCATCEST: gi|88381570|gb|CI682231.1|CI682231
genomic: GAAGCTGCGGAAGAATCAGGTCGCGGATACGGATATCGGCGTCTCCGTAGgtgggtgatt ... tttcctgcagATTCAATTATATTCCCTGAAGTTCCGATTGCACTTCGATTATCAAGCCATC
EST: GAAGCTGCGGAAGAATCAGGTCGCGGATACGGATATCGGCGTCTCCGTAG ATTCAATTATATTCCCTGAAGTTCCGATTGCACTTCGATTATCAAGCCATCEST: gi|29678404|gb|CB674679.1|CB674679
genomic: GAAGCTGCGGAAGAATCAGGTCGCGGATACGGATATCGGCGTCTCCGTAGgtgggtgatt ... tttcctgcagATTCAATTATATTCCCTGAAGTTCCGATTGCACTTCGATTATCAAGCCATC
EST: GAAGCTGCGGAAGAATCAGGTCGCGGATACGGATATCGGCGTCTCCGTAG ATTCAATTATATTCCCTGAAGTTCCGATTGCACTTCGATTATCAAGCCATC
genomic: GAAGCTGCGGAAGAATCAGGTCGCGGATACGGATATCGGCGTCTCCGTAGgtgggtgatt ... tttcctgcagATTCAATTATATTCCCTGAAGTTCCGATTGCACTTCGATTATCAAGCCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAAGAAGGGGCCCCTCGGGACCATATGGATCGCGGCGCATTTGGAGCGGAAGCTGCGGAAGAATCAGGTCGCGGATACGGATATCGGCGTCTCCGTAGgtgggtgattttgctgtttcacaagcttttttcttttcggatctactaccatttttttttgtttctgttcgagcatgttagggcctcacacgtagactgc
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA