1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tggttgttgtgttattgtgtcctatcacttgataaactgcaattccaaaacaaaactttgtatatcttcagcagctaaattttatttgtttccccctcagGAATTAATGCTGAACAAGGACCAGTCAATTCAACTTGAGGCTGATGATGG
species | Oryza sativa |
transcript | LOC_Os01g67250.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CACATATTGGGTTGCATTTGGAAGAG GAATTAATGCTGAACAAGGACCAGTCAATTCAACTTGAGGCTGATGATGGEST: gi|29630217|gb|CB635226.1|CB635226
genomic: CACATATTGGGTTGGATTTGGAAGAGgtaatctcag ... tccccctcagGAATTAATGCTGAACAAGGACCAGTCAATTCAACTTGAGGCTGATGATGG
EST: AAAGATTTGGTGATGGCAATTCTTCACATATTGGGTTGGATTTGGAAGAG GAATTAATGCTGAACAAGGACCAGTCAATTCAACTTGAGGCTGATGATGGEST: gi|29678404|gb|CB674679.1|CB674679
genomic: AAAGATTTGGTGATGGCAATTCTTCACATATTGGGTTGGATTTGGAAGAGgtaatctcag ... tccccctcagGAATTAATGCTGAACAAGGACCAGTCAATTCAACTTGAGGCTGATGATGG
EST: AAAGATTTGGTGATGGCAATTCTTCACATATTGGGTTGGATTTGGAAGAG GAATTAATGCTGAACAAGGACCAGTCAATTCAACTTGAGGCTGATGATGG
genomic: AAAGATTTGGTGATGGCAATTCTTCACATATTGGGTTGGATTTGGAAGAGgtaatctcag ... tccccctcagGAATTAATGCTGAACAAGGACCAGTCAATTCAACTTGAGGCTGATGATGG
caaaacaaaactttgtatatcttcagcagctaaattttatttgtttccccctcagGAATTAATGCTGAACAAGGACCAGTCAATTCAACTTGAGGCTGATGATGG
agctaaa putative branch site (score: 49)
ttttatttgtttcccc CT-rich tract
taaattttatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggttgttgtgttattgtgtcctatcacttgataaactgcaattccaaaacaaaactttgtatatcttcagcagctaaattttatttgtttccccctcagGAATTAATGCTGAACAAGGACCAGTCAATTCAACTTGAGGCTGATGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- -ttgttgt
- - - - - - - -tgtgtcc
- - - - - - - - - - - - - - - - - aactgca
- - - - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagcagc