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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAATCACCTGGATTACCTCGGCGTTCAAGTTGCATGGGTTACTGGACCATGGTTTCTATCTATATTCATGAACATGCTACCATGGGAAAGTGgtaagtcttatttttctttatttgaaagagtaatttcggaaaggttttatggtcgaagtcgtagaaaaccatgggtattttggcttgtggtatacatccc...

Basic information

species Oryza sativa
transcript LOC_Os01g61860.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g61860.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G096470_T01 (Zea mays), 5'ss of exon 9
TAAATCACCTGGATTACCTCGGCGTTCAAGTTGCATGGGTTACTGGACCATGGTTTCTATCTATATTCATGAACATGCTACCATGGGAAAGTGgtaagtcttatttttctttatttgaaagagtaatttcggaaaggttttatggtcgaagt--cgtagaaaaccatgggtattttggcttgtggtatacatccc-
||||||| || |||||||| || || |||||||||||||| ||||| |||||||| |||||||| || ||||||||||| || |||||||||||| || |||||| |   |||||||||| |   |  |        ||||      || ||  |   |    || |   |  | |   |||    ||  | |   
TAAATCATCTTGATTACCTTGGTGTACAAGTTGCATGGGTCACTGGTCCATGGTTCCTATCTATTTTTATGAACATGCTTCCCTGGGAAAGTGgtgagccttattctgtattatttgaaacatctacatttt---cctttttgaaatgatgtttctctgcttgccttattttgtgttatttgaaacatttaccttt

upper sequence: LOC_Os01g61860.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 9
TAAATCACCTGGATTACCTCGGCGTTCAAGTTGCATGGGTTACTGGACCATGGTTTCTATCTATATTCATGAACATGCTACCATGGGAAAGTGgt-aagtcttat-ttttctttatttgaaagagtaatttcggaaaggttt-tatggtcgaagtcgtagaa-aaccatgggtattttggcttgtggtatacatccc---------------------------
  ||||| || ||||| || || || || || ||||||||||||||||||||||| || || || ||  |||||||||| || |||||||||||| | || |||| || | | |||||   || |||   | |      ||   |  || |     ||  ||  | |||  |||   |    | ||   | | | |                            
CCAATCATCTAGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcaggttttatgttctatctatttagtagtgtagcctagtcttacttcacaaagttgccaatgtgaaatgagcatttgtacgctattgtttgagcttccttctgatccattgtaattatttggacttcag

upper sequence: LOC_Os01g61860.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 9
TAAATCACCTGGATTACCTCGGCGTTCAAGTTGCATGGGTTACTGGACCATGGTTTCTATCTATATTCATGAACATGCTACCATGGGAAAGTGgt-aagtcttat-ttttctttatttgaaagagtaatttcggaaaggttt-tatggtcgaagtcgtagaa-aaccatgggtattttggcttgtggtatacatccc---------------------------
  ||||| |||||||| || || || || || ||||||||||||||||||||||| || || || ||  |||||||||| || |||||||||||| | || |||| || | | ||||    || |||  || | |  | ||   |  || |     ||  ||  | |||  |||   |    |  |   | | | |                            
CCAATCATCTGGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcaggttttatgttctatctattgagtagcgtagcttagtattgcttcacaaagttgccaatgtcaaatgagcatttgtacactattgttcgagcttccttctgatctattgtaattatttggacttcag

upper sequence: LOC_Os01g61860.1 (Oryza sativa), 5'ss of exon 9
lower sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 9
TAAATCACCTGGATTACCTCGGCGTTCAAGTTGCATGGGTTACTGGACCATGGTTTCTATCTATATTCATGAACATGCTACCATGGGAAAGTGgtaagtctt-----att----------tttctttatttgaaagagtaatttcggaaaggtt---ttatggtcgaagtc-gtagaaaaccatgggtattttggcttgtggtatacatccc------------------------------------------
|  |||| |||||||| || || || ||||| || |||||||| || ||||||||||| || || |||||||| ||||| ||||||||||||||| ||  ||     |||           |   || ||||||| || ||||  | ||    |   ||||| | | | || ||  |||        | |||    ||| | | |    |                                            
TTCATCATCTGGATTATCTTGGAGTGCAAGTGGCTTGGGTTACAGGGCCATGGTTTCTTTCCATCTTCATGAATATGCTTCCATGGGAAAGTGgtcaggttttaaacattggaattaaagctgtcttgtttgaaatag-aattgagtaactagtaaattatgctggcaatctgttaaaatttgatcatctttctctttgagatttgggactgagaacccattttctttctaaatgttcgtcttcttgatcacag

upper sequence: LOC_Os01g61860.1 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 9
TAAATCACCTGGATTACCTCGGCGTTCAAGTTGCATGGGTTACTGGACCATGGTTTCTATCTATATTCATGAACATGCTACCATGGGAAAGTGgtaagtctt-atttttctttatttgaaagagtaatttcggaaaggttttatggtcgaagtcgtagaaaaccatgggtattttggcttgtggtatacatccc---------------------------------------------------------------------------------------
| |||||||||||||  || || || || || ||||||||||||||||| |||||||| || || || ||||| ||||| ||||||||||||||| |||||  ||  |   |||| |  ||     || |      ||   ||   | | | |   |    |       |  ||||  || |||   |  || |                                                                                       
TTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTGgtcagtctccatcatggcttatatagaaattagatgttatttggggcctaca-ttgcatttaaaatctatttatatttctttgatttatggc-catctcactaatcttagcattctcattgtcatgattgcattcataatgtcttggttacaagcttatgggttttgatggctttctcctgacttcag