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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcgcattattcttgtttgtattaaaatatctgtatatcatgacttggcatatatgttaaccgacaattttgactacttttatgcatggttttttgcagTAAATCACCTGGATTACCTCGGCGTTCAAGTTGCATGGGTTACTGGACCATGGTTTCTATCTATATTCATGAACATGCTACCATGGGAAAGTG

Basic information

species Oryza sativa
transcript LOC_Os01g61860.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g61860.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G096470_T01 (Zea mays), 3'ss of exon 8
gtttgcgcattattcttgtttgtattaaaatatctgtatatcatgacttggcatatatgttaaccg-acaattttgactacttttatgcatggttttttgcagTAAATCACCTGGATTACCTCGGCGTTCAAGTTGCATGGGTTACTGGACCATGGTTTCTATCTATATTCATGAACATGCTACCATGGGAAAGTG
            |   ||  | ||||  | ||| ||||   ||||| ||| || | || ||||| | ||||  ||||| |     |  |||| | |||| |||||||||| || |||||||| || || |||||||||||||| ||||| |||||||| |||||||| || ||||||||||| || ||||||||||
-----------gtgtgtgact-tattccattatttgtaccacatga-ttgtcagacatattaacagcacaagattgac-aagaacactcatg-tattttccagTAAATCATCTTGATTACCTTGGTGTACAAGTTGCATGGGTCACTGGTCCATGGTTCCTATCTATTTTTATGAACATGCTTCCCTGGGAAAGTG

upper sequence: LOC_Os01g61860.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GLYMA10G44110.1 (Glycine max), 3'ss of exon 8
gtttgcgcattattct----tgtttgtattaaaatatctgtatatcatgacttggcatatatgtta-accgacaattttgactacttttatgcatggtttttt-gcagTAAATCACCTGGATTACCTCGGCGTTCAAGTTGCATGGGTTACTGGACCATGGTTTCTATCTATATTCATGAACATGCTACCATGGGAAAGTG
|||||   | |||| |      ||| | | |    | |     |     | |||       ||| | |      | ||    |  | || ||     |||||| ||||  ||||| || ||||| || || || || || ||||||||||||||||||||||| || || || ||  |||||||||| || ||||||||||
gtttgtaaactattttaattcatttttgtcattgaacccaccaactgaaatttgtttctagtgtcacatttcttacttgttattttcttgtgttcactttttttgcagCCAATCATCTAGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTG

upper sequence: LOC_Os01g61860.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GLYMA20G38810.1 (Glycine max), 3'ss of exon 8
gtttgcgcattattcttgtttgtattaaaatatctgtatatcatgacttggcatatatgt-taaccgacaattt-----tgactactt--ttatgcatggtt-ttttgcagTAAATCACCTGGATTACCTCGGCGTTCAAGTTGCATGGGTTACTGGACCATGGTTTCTATCTATATTCATGAACATGCTACCATGGGAAAGTG
|||||   | |||| |  ||  | ||    | | || |  |||  |  ||   | | | | || |   | ||||     |   || ||  || || ||  || ||||||||  ||||| |||||||| || || || || || ||||||||||||||||||||||| || || || ||  |||||||||| || ||||||||||
gtttgtaaactattttaattcatttttg--tctttgaac-tcacaaagtgaattttgtttctagcattccatttcttatttgttatttaattgtgtatacttattttgcagCCAATCATCTGGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTG

upper sequence: LOC_Os01g61860.1 (Oryza sativa), 3'ss of exon 8
lower sequence: AT3G55020.1 (Arabidopsis thaliana), 3'ss of exon 8
gtttgcgcattattcttgtttgtattaaaatatctgtatatcatgacttggcatatatgttaaccgacaattttgactacttttatgcatggttttttgcagTAAATCACCTGGATTACCTCGGCGTTCAAGTTGCATGGGTTACTGGACCATGGTTTCTATCTATATTCATGAACATGCTACCATGGGAAAGTG
               |   ||   | ||| | | | | | ||||    | | | | ||||| || |  | |  | |   ||   |    |   | | | ||||  |||| |||||||| || || || ||||| || |||||||| || ||||||||||| || || |||||||| ||||| |||||||||||||
--------------gtgagttccctcaaagt-tttttgtttcat---cttgtaga-atgttcacagttagtactaagctctgcaacttttctatgtctacagTTCATCATCTGGATTATCTTGGAGTGCAAGTGGCTTGGGTTACAGGGCCATGGTTTCTTTCCATCTTCATGAATATGCTTCCATGGGAAAGTG

upper sequence: LOC_Os01g61860.1 (Oryza sativa), 3'ss of exon 8
lower sequence: Vv13s0067g03420.t01 (Vitis vinifera), 3'ss of exon 8
gtttgcgcattattcttgtttgtattaaaatatctgtat----atcatgacttggcatatatgttaaccgacaattttgactactt---ttatgcatg-gttttttgcagTAAATCACCTGGATTACCTCGGCGTTCAAGTTGCATGGGTTACTGGACCATGGTTTCTATCTATATTCATGAACATGCTACCATGGGAAAGTG
|||||    || ||     || |||||   |  |  | |    || || | ||    | ||| | |  |        || || |||   | |    || ||  | |||||| |||||||||||||  || || || || || ||||||||||||||||| |||||||| || || || ||||| ||||| |||||||||||||
gtttgtttcttgttgcatattttattatcgttgcccttttccaattattattttttctttatatgaggcattttggatggcttcttatttcacctttgtgtcatgtgcagTTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggcatatatgttaaccgacaattttgactacttttatgcatggttttttgcagTAAATCACCTGGATTACCTCGGCGTTCAAGTTGCATGGGTTACTGGACCATGGTTTCTATCTATATTCATGAACATGCTACCATGGGAAAGTG
                                             ttttttgc  CT-rich tract
     atatatgttaa  TA-rich tract