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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTGACTTGACAGAAACTAGTTCTGGAAGTACAGATGACATGTATAGTGGCCTGACTGTCAACACTGAGATTGATTCTTTGCCTGATCCAAAAGACCAGgtatccttctcaaaataacacttctttcacccctaaaattatcaattatggtttcaaaaaaattcagcagacaaactaaataagtcaaaaagtcgtgtat...

Basic information

species Oryza sativa
transcript LOC_Os01g61860.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g61860.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G096470_T01 (Zea mays), 5'ss of exon 11
AAGTGACTTGACAGAAACTAGTTCTGGAAGTACAGATGACATGTATAGTGGCCTGACTGTCAACACTGAGATTGATTCTTTGCCTGATCCAAAAGACCAGgtatccttctcaaaat---aacacttctttcacccctaaaattatcaatta-tggtttcaaaaaaattcagcagacaaactaaataagtcaaaaagtcgtgtat
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CGATAAGAACCAAGAAGCCAATTGTAGTAATGTGGATGATATGTATCATGGCCTCACTGTCAACTCTGAGATTGATTCTCTGCCTGATCCTAAAGACCAGgtatccttctcaatatgctaatttttcattcatttccaaa-tcataagtcagtagtttcattaaact--aaggggcaaactaaataaaataaggaaatata-at
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58663408|gb|CK052094.1|CK052094
EST:     GCCTGACTGTCAACACTGAGATTGATTCTTTACCTGATCCAAAAGACCAG                         GTGGTCTGGCTGAAGGTTGAGTTATGTCAACTGCTGGAGGAGAGAAGATCA
genomic: GCCTGACTGTCAACACTGAGATTGATTCTTTGCCTGATCCAAAAGACCAGgtatccttct ... gttatttcagGTGGTCTGGCTGAAGGTTGAGTTATGTCAACTGCTGGAGGAGAGAAGATCA