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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgggtcgatcttttgcatttttgtcgctcaaacaattgtaacaaaaaaaagtttgtataatctcaggatatatattggtcactgcatgaatacttaccactggtgttggttacagGTCCTGCGCTTGTGACAACAAAGGATGCTGGGGATGCTGTGACCCTTTTACAGTCTTTGGCTGGTTCTACTTTTGACAGCAGCCAACTTGTTTTAACTGC

Basic information

species Oryza sativa
transcript LOC_Os01g61860.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g61860.2 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G096470_T01 (Zea mays), 3'ss of exon 10
gtactgggtcgatcttttgcatttttgtcgctcaaacaattgt-aacaaaaaaaagtttgtataatctcaggatatatattggtcactgcatgaatacttaccactggtgttggttacagGTCCTGCGCTTGTGACAACAAAGGATGCTGGGGATGCTGTGACCCTTTTACAGTCTTTGGCTGGTTCTACTTTTGACAGCAGCCAACTTGTTTTAACTGC
                  | | |   ||| |||      || | ||    |||  |   |  || ||| || |  || |||     ||| ||  |  |||   ||   | |   || |||||||||| |||||||||||||| |||||||||||||| || |||||||| |||||||| |||||||| ||||||||||| ||||| ||||||||||| ||
------------------gtaatggggtccctccttttcttattaatgccaaactgcccgagta-tcttagaagttacatt-----ctggatagaggcttctgaccactataaattgcagGTCCTGCACTTGTGACAACAAAAGATGCTGGGGATGCAGTAACCCTTTTGCAGTCTTTAGCTGGTTCCACTTTTGACAGTAGCCAGCTTGTTTTAACAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcaggatatatattggtcactgcatgaatacttaccactggtgttggttacagGTCCTGCGCTTGTGACAACAAAGGATGCTGGGGATGCTGTGACCCTTTTACAGTCTTTGGCTGGTTCTACTTTTGACAGCAGCCAACTTGTTTTAACTGC
                              tacttac  putative branch site (score: 1)
       atatatatt  TA-rich tract