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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCCAGGTCATCCCGCACTAGATGAGGATGGCAGAAATGCTTTAAGACGCTTGCTCACAGCTTATGCGAGACATAACCCATCAGTTGGTTACTGTCAGgtatggctttcccttacttctgactcatgtcacttttcttgtcactggattgatgtagcttctttgggaaaccttgcatattgcaagaccaatctgttgc...

Basic information

species Oryza sativa
transcript LOC_Os01g61860.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g61860.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G096470_T02 (Zea mays), 5'ss of exon 5
GTTCCCAGGTCATCCCGCACTAGATGAGGATGGCAGAAATGCTTTAAGACGCTTGCTCACAGCTTATGCGAGACATAACCCATCAGTTGGTTACTGTCAGgtatggctttcccttacttctgactcatgtcacttttcttgtcactggattgatgt-agcttctttgggaaaccttgcatattg-caagaccaatctgttgc
 || ||||| || || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||  |||| || ||| ||||||||||||| |||||||   | | ||||| | || | |  | | ||||||||||||    || ||   | ||||| ||  | |  ||||  |  ||  || | |   |||  |  
ATTTCCAGGACACCCTGCACTAGATGAGGATGGCAGAAATGCCTTAAGGCGCTTGCTCACAGCTTATGCTCGACACAATCCACCAGTTGGTTACTGCCAGgtatatttctaccttagtgcttattgctattacttttcttgtcgaatgaatgtcattagcttgttacgaagcccttataagttttcaggtctggtctcat--

upper sequence: LOC_Os01g61860.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 5
GTTCCCAGGTCATCCCGCACTAGATGAGGATGGCAGAAATGCTTTAAGACGCTTGCTCACAGCTTATGCGAGACATAACCCATCAGTTGGTTACTGTCAGgtatggctttcccttacttctgactcatgtcacttttcttgtcactggattgatgtagcttctttgggaaaccttgcatattgcaagaccaatctgttgc--
 || || |||||||| ||  | || |||||||| ||||||||||| ||||| || || || || |||||  |||||||||| |||||||||||||| |||||      |||  | |    | ||   |   | |||||    |  |   ||     ||||  |||    |   ||    |  |  |  | |||  | ||   
ATTTCCTGGTCATCCTGCTTTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAGTTGGTTACTGCCAGgtccttgcttctttaaagagttacatgttctatttttcccaacttttttttataaaagctgttttttccattatttttca--gtcaatctaatgaggtgttt

upper sequence: LOC_Os01g61860.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 5
GTTCCCAGGTCATCCCGCACTAGATGAGGATGGCAGAAATGCTTTAAGACGCTTGCTCACAGCTTATGCGAGACATAACCCATCAGTTGGTTACTGTCAGgtatggctttcccttacttctgactcatgtcacttttcttgtcactgg-attgatgtagcttctttgggaaaccttgcatattgcaagaccaatctgttgc
 || || |||||||| || || || |||||||| ||||||||||| ||||| || || || || |||||  |||||||||| |||||||||||||| |||||      |||  | |    | ||   |   | |||||   |   |   |||     ||||  |||    |   ||    | | |||    |||  | || 
ATTTCCTGGTCATCCTGCTCTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAGTTGGTTACTGCCAGgtccttgcttctttaaagagttacatgttctatttttcccattttttttattataaaagctgttttttccattatttttcagt-caatctaaatgaggtgt

upper sequence: LOC_Os01g61860.2 (Oryza sativa), 5'ss of exon 4
lower sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTCCCAGGTCATCCCGCACTAGATGAGGATGGCAGAAATGCTTTAAGACGCTTGCTCACAGCTTATGCGAGACATAACCCATCAGTTGGTTACTGTCAGgtatggctttcccttacttctgac-tcatgtcacttttcttgtcactggattgatgtagcttctttgggaaaccttgcatattgcaagacca-atctgttgc-----------------
 || || |||||||| || |||||||| ||||| ||||||||| || | || ||||| || |||||||| || ||||| || || || || |||||||||||||   | | | | ||   |  | | || |   || |  |  | ||   ||  |   |   | | |  ||         ||  ||||   | |||| |||                  
ATTTCCTGGTCATCCTGCTCTAGATGATGATGGTAGAAATGCTCTACGGCGTTTGCTTACTGCTTATGCTAGGCATAATCCTTCTGTAGGATACTGTCAGgtat--ttgttcttaaccaatatcatgatctttattgtagtacctctattttagtaccgagacatagtaaattaacattaatatcaagttaatatcttttgtcaatatactttctgcag

upper sequence: LOC_Os01g61860.2 (Oryza sativa), 5'ss of exon 4
lower sequence: AT2G39280.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTCCCAGGTCATCCCGCACTAGATGAGGATGGCAGAAATGCTTTAAGACGCTTGCTCACAGCTTATGCGAGACATAACCCATCAGTTGGTTACTGTCAGgtat--ggctttcccttacttctgactcatgtcacttttcttgtcactggattgatgtagct--tctttgggaaaccttgcatattgcaagaccaatctgt-tgc--
 || ||||||||||| || |||||||| |||  |||||||||| | || || ||||| || |||||||| || ||||| || || ||||| |||||||||||||  || | |    ||||      ||      ||  | | || ||  | |      |       | |  |  |  |   || ||| |  |  ||    | |||  
ATTTCCAGGTCATCCTGCCCTAGATGATGATTTCAGAAATGCTCTGAGGCGATTGCTAACTGCTTATGCCAGGCATAATCCCTCTGTTGGATACTGTCAGgtattcggttatttaatactgtcacttctgtatcctagtatggttacatgctcacaaaaatgaacatctcagttatttgttatcttgtatcaataaatcatgtgcag

upper sequence: LOC_Os01g61860.2 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 5
GTTCCCAGGTCATCCCGCACTAGATGAGGATGGCAGAAATGCTTTAAGACGCTTGCTCACAGCTTATGCGAGACATAACCCATCAGTTGGTTACTGTCAGgta--tggctttcccttacttc-tgactcatgtcacttttcttgtcactggattgatgtagcttctttgggaaaccttgcatattgcaagaccaatctgttgc
 |||||||||||||| || |||||||||||||| ||||||||||| || || || || || || |||||  |||| ||||| || || || ||||||||||||  ||| ||      | ||  ||       |   |||| | ||      || ||  ||  |||||  | |||  |||  |  ||||  |   || |  |  
ATTCCCAGGTCATCCTGCTCTAGATGAGGATGGTAGAAATGCTTTGAGGCGTTTACTTACGGCATATGCTCGACACAACCCCTCTGTAGGGTACTGTCAGgtaattggattggaaggagtttatgtggttaattgtttttatggttggaaaatagagttactttctt--gcaaaatttgtgtcatgcataattgatatagta-