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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCTTGATACTGTTGGAATGAAAAGATCGAAAGCCTATCTTGTCAATGGTGTTACAATGTTTGTTGCATGGCTGgtaagtgaaagttgctacactgtaattggaggttagaagttaaaaatcatgcattgactgcaggtgatcggatagttatgtactattattagatgtacta...

Basic information

species Oryza sativa
transcript LOC_Os01g56230.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g56230.5 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM5G825226_T03 (Zea mays), 5'ss of exon 7
GTTTCTTGATACTGTTGGAATGAAAAGATCGAAAGCCTATCTTGTCAATGGTGTTACAATGTTTGTTGCATGGCTGgtaagtgaaagttgctacactgtaattggaggttagaagttaaaaatcatgcattgactgcaggtgatcggatagttatgtactattattagatgtacta------
||| |||||||| | |||| |||||| ||| || ||||||||||||||||||||||| |||||| |||||||||||||| ||      | |||||  ||||||  |   |  ||||||  ||| |  ||||  ||||   |  |   | | |  | || ||   ||  || || |       
GTTCCTTGATACCGCTGGACTGAAAAAATCCAAGGCCTATCTTGTCAATGGTGTTACGATGTTTATTGCATGGCTGgtatgt------tactacaacgtaatttcattctgcaagttatgaatgacacattatctgctatttgttatagaatattctaataagctttaatataatgttgtgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|300215972|gb|HO088598.1|HO088598
EST:     GATCGAAAGCCTATCTTGTCAATGGTGTTACAATGTTTGTTGCATGGCTG                         GTGGCAAGGATAATTTTGTTCATCTACTTGTTTTACCACATATACTTTCAC
genomic: GATCGAAAGCCTATCTTGTCAATGGTGTTACAATGTTTGTTGCATGGCTGgtaagtgaaa ... cttactacagGTGGCAAGGATAATTTTGTTCATCTACTTGTTTTACCACATATACTTTCAC
EST: gi|24208073|gb|AU225100.1|AU225100
EST:     GATCGAAAGCCTATCTTGTCAATGGTGTTACAATGTTTGTTGCATGGCTG                         GTGGCAAGGATAATTTTGTTCATCTACTTGTTTTACCACATATACT
genomic: GATCGAAAGCCTATCTTGTCAATGGTGTTACAATGTTTGTTGCATGGCTGgtaagtgaaa ... cttactacagGTGGCAAGGATAATTTTGTTCATCTACTTGTTTTACCACATATACT
EST: gi|29660432|gb|CB656707.1|CB656707
EST:     GATCGAAAGCCTATCTTGTCAATGGTGTTACAATGTTTGTTGCATGGCTG                         GTGGCAAGGATAATTTTGTTCATCTACTTGTTTTACCACATATACTTTCAC
genomic: GATCGAAAGCCTATCTTGTCAATGGTGTTACAATGTTTGTTGCATGGCTGgtaagtgaaa ... cttactacagGTGGCAAGGATAATTTTGTTCATCTACTTGTTTTACCACATATACTTTCAC
EST: gi|88260142|gb|CI361643.1|CI361643
EST:     GTTGCATGGCTG                         GTGGCAAGGATAATTTTGTTCATCTACTTGTTTTACCACATATACTTTCAC
genomic: GTTGCATGGCTGgtaagtgaaa ... cttactacagGTGGCAAGGATAATTTTGTTCATCTACTTGTTTTACCACATATACTTTCAC