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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTTCTTTAGTCTATGCTATTTATTCTGAAGAAGGACAGTTGTACACATACATGGTTCTCATCTCTGAAACAACCACACCTGGAATCAACCTCCGATGgtatgcttcatgaaaaagatcatgcaccttttctttatacttattttacttcaatctatctgacctgttatgtaccttcttcatcaaag

Basic information

species Oryza sativa
transcript LOC_Os01g56230.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g56230.5 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM5G825226_T03 (Zea mays), 5'ss of exon 6
TTATTTCTTTAGTCTATGCTATTTATTCTGAAGAAGGACAGTTGTACACATACATGGTTCTCATCTCTGAAACAACCACACCTGGAATCAACCTCCGATGgtatgcttcatgaaaaagatcatgcaccttttctttatacttattttacttcaatctatctgacctgttatgtaccttcttcatcaaag
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TTATTTCTATAGTCTATGCTATGTATTCTGGGGAAGGACAGTTGTACACATACATGGTTCTCATCTCTGAAACAACCACACCTGGAATCAACCTCCGATGgtatg--tgatgaaacgaat-atgcactgtttttttatcatactctttacttaatgcatctgacctgttctgt--------catcaag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29660431|gb|CB656706.1|CB656706
EST:     TACATGGTTCTCATCTCTGAAACAACCACACCTGGGATCAACCTCCGATG                         GTTTCTTGATACTGT
genomic: TACATGGTTCTCATCTCTGAAACAACCACACCTGGAATCAACCTCCGATGgtatgcttca ... ttcatcaaagGTTTCTTGATACTGT
EST: gi|300215972|gb|HO088598.1|HO088598
EST:     TACATGGTTCTCATCTCTGAAACAACCACACCTGGAATCAACCTCCGATG                         GTTTCTTGATACTGTTGGAATGAAAAGATCGAAAGCCTATCTTGTCAATGG
genomic: TACATGGTTCTCATCTCTGAAACAACCACACCTGGAATCAACCTCCGATGgtatgcttca ... ttcatcaaagGTTTCTTGATACTGTTGGAATGAAAAGATCGAAAGCCTATCTTGTCAATGG
EST: gi|24208073|gb|AU225100.1|AU225100
EST:     TACATGGTTCTCATCTCTGAAACAACCACACCTGGAATCAACCTCCGATG                         GTTTCTTGATACTGTTGGAATGAAAAGATCGAAAGCCTATCTTGTCAATGG
genomic: TACATGGTTCTCATCTCTGAAACAACCACACCTGGAATCAACCTCCGATGgtatgcttca ... ttcatcaaagGTTTCTTGATACTGTTGGAATGAAAAGATCGAAAGCCTATCTTGTCAATGG
EST: gi|29660432|gb|CB656707.1|CB656707
EST:     TACATGGTTCTCATCTCTGAAACAACCACACCTGGAATCAACCTCCGATG                         GTTTCTTGATACTGTTGGAATGAAAAGATCGAAAGCCTATCTTGTCAATGG
genomic: TACATGGTTCTCATCTCTGAAACAACCACACCTGGAATCAACCTCCGATGgtatgcttca ... ttcatcaaagGTTTCTTGATACTGTTGGAATGAAAAGATCGAAAGCCTATCTTGTCAATGG