1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgaagcagtgtgtttgtagaatttatgtcctatttcacgctatatttgtcttttaacttccaccttctaactgttttagGGGCATGTCCACTGTCCATGCAATGTTTATCACATTAATGTCAGTTTACCTAGTATTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGCCCAGTAACA
species | Oryza sativa |
transcript | LOC_Os01g56230.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGGGTTATGGTTCTCTTACGAAAATCCAAAAGCTTGAGTGGAACAACAG GGGCATGTCCACTGTCCATGCAATGTTTATCACATTAATGTCAGTTTACCTEST: gi|300215972|gb|HO088598.1|HO088598
genomic: AAGGGTTATGGTTCTCTTACGAAAATCCAAAAGCTTGAGTGGAACAACAGgtgaagcagt ... actgttttagGGGCATGTCCACTGTCCATGCAATGTTTATCACATTAATGTCAGTTTACCT
EST: AAGGGTTATGGTTCTCTTACGAAAATCCAAAAGCTTGAGTGGAACAACAG GGGCATGTCCACTGTCCATGCAATGTTTATCACATTAATGTCAGTTTACCTEST: gi|88314263|gb|CI602595.1|CI602595
genomic: AAGGGTTATGGTTCTCTTACGAAAATCCAAAAGCTTGAGTGGAACAACAGgtgaagcagt ... actgttttagGGGCATGTCCACTGTCCATGCAATGTTTATCACATTAATGTCAGTTTACCT
EST: AAGGGTTATGGTTCTCTTACGAAAATCCAAAAGCTTGAGTGGAACAACAG GGGCATGTCCACTGTCCATGCAATGTTTATCACATTAATGTCAGTTEST: gi|88337687|gb|CI632189.1|CI632189
genomic: AAGGGTTATGGTTCTCTTACGAAAATCCAAAAGCTTGAGTGGAACAACAGgtgaagcagt ... actgttttagGGGCATGTCCACTGTCCATGCAATGTTTATCACATTAATGTCAGTT
EST: AAGGGTTATGGTTCTCTTACGAAAATCCAAAAGCTTGAGTGGAACAACAG GGGCATGTCCACTGTCC
genomic: AAGGGTTATGGTTCTCTTACGAAAATCCAAAAGCTTGAGTGGAACAACAGgtgaagcagt ... actgttttagGGGCATGTCCACTGTCC
atgtcctatttcacgctatatttgtcttttaacttccaccttctaactgttttagGGGCATGTCCACTGTCCATGCAATGTTTATCACATTAATGTCAGTTTACCTAGTATTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGCCCAGTAACA
ttctaac putative branch site (score: 1)
ctgtttt CT-rich tract
tatatttgtcttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaagcagtgtgtttgtagaatttatgtcctatttcacgctatatttgtcttttaacttccaccttctaactgttttagGGGCATGTCCACTGTCCATGCAATGTTTATCACATTAATGTCAGTTTACCTAGTATTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGCCCAGTAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA