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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAGgtaaatattactcgtggctattatttttctgggttgtattctcagtgatgtgtagaagctaatattaatagatgtagtttaacaattcaactttgttatggttctgtttctctcctttctatgatgccaataatagctaatgattgcag

Basic information

species Oryza sativa
transcript LOC_Os01g54020.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g54020.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G177970_T01 (Zea mays), 5'ss of exon 7
GGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAGgtaaatattactcgtggctattatttttctgggttgtattctcagtgatgtgtagaagctaatattaatagatgtagtttaacaattcaactttgtt-atggttctgtttctctcctttctatgatgccaataa-tagct--aatgattgcag
||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||  |||||||||| ||  ||| |    |||   ||||                              |||||     |||| ||| |   |  ||||||| || | || ||     ||||| |||| | || ||     ||||   |  ||  ||||||  |||
GGTGATGAAAATGTTGGGGTTGCACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaa--ttattaacagct--cattt------------------------------agctag----aataaatgcaacatttcaattcagctgtatttattcccttgtttttctcatctcaatatgaacaatggcttacttgaatgatcacag

upper sequence: LOC_Os01g54020.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G177970_T03 (Zea mays), 5'ss of exon 7
GGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAGgtaaatattactcgtggctattatttttctgggttgtattctcagtgatgtgtagaagctaatattaatagatgtagtttaacaattcaactttgtt-atggttctgtttctctcctttctatgatgccaataatagctaatgattgcag
||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||  |||||||||| ||  ||| |    |||   ||||                              |||||     |||| ||| |   |  ||||||| || | || ||     ||||| |||| | ||    ||   || ||| ||| |         
GGTGATGAAAATGTTGGGGTTGCACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaa--ttattaacagct--cattt------------------------------agctag----aataaatgcaacatttcaattcagctgtatttattcccttgtttttctcatctc---aatatgaacaatggctta---------

upper sequence: LOC_Os01g54020.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA06G09240.2 (Glycine max), 5'ss of exon 3
GGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAGgtaaatattactcgtggctattatttttctggg-ttgtattctcagtgatgtgtagaagctaatattaatagatgtagtttaacaattcaactttgttatggttctgtttctctcctttctatgatgccaataatagctaatgattgcag
|| |||||| | ||||| || || |||||||||||||||||| | ||||||||||| || || || || ||||| | | ||     |  | | ||| ||   |   || |||      |  | ||||| ||  ||  | || | |  || |  || ||   ||  ||  | |  |                                               
GGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGgtgattttt-----tacccactatcttgtggaaattttataagtccttgtatgtagtagtgaaagtaaaaaaacctaatg-aataagctaatgttact-taatatga-------------------------------------------

upper sequence: LOC_Os01g54020.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA04G09130.2 (Glycine max), 5'ss of exon 7
GGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAGgtaaatattactcgtggctattatttttctgggttgtattctcagtgatgtgtagaagctaatattaatagatgtagtttaacaattcaactttgttatggttctgtttctctcctttctatgatgccaataatagctaatgattgcag
|| |||||| | ||||| || || |||||||||||||||||| | ||||||||||| || || || || ||||| | | ||          | ||  ||       | |||      |  | ||||| ||  ||  | || | |      | || ||   ||  ||  | |  |                                               
GGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGgtgatttttgac-----acactaccttgtgaaaatttataagtccttgtatgtagtagtgaaagtaaaaaaaacctaatgaataagctaatgttact-taatatga-------------------------------------------

upper sequence: LOC_Os01g54020.2 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv04s0008g00200.t01 (Vitis vinifera), 5'ss of exon 7
GGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAGgtaaatat-tactcgtggctattat--ttttctgggt-tgtattctcagtgatgtgtagaagctaatattaatagatgtagtttaacaattcaactttgttatggttctgtttctctcctttctatgatgccaataatagctaatgattgcag
|| |||||||||||||| || || ||| |||||||||||||| | ||||||||||| |||||  | || |||||| | ||  | |  |   || ||    || |||    | ||||||   ||   |  |  |  |  | |   ||||  |   |  ||| |  | ||    ||                                                   
GGAGATGAAAATGTTGGGGTTGCCCTTCTGACTTATCCTGTTCTCATGGCTTCTGATATTCTTTTATATCAGgtatacatacagttttatgtagtacaacttgctgaacatttattcttt-tgggattcattatttggt-tctgtagacatgcctatacactcaagctcatata---------------------------------------------------