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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCTGAAGCCCTTATACCTCCAGCAGGGGCTCGTGTTATGTCCTTAACCGACGGTCTCTCCAAGgtagttagccatactcattatcattttaatcctgatcacaaaaaatgaaactactaggacttttttgttattaaattacttattgaagtgtcattacacc...

Basic information

species Oryza sativa
transcript LOC_Os01g54020.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g54020.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G177970_T01 (Zea mays), 5'ss of exon 10
GTTCCTGAAGCCCTTATACCTCCAGCAGGGGCTCGTGTTATGTCCTTAACCGACGGTCTCTCCAAGgtagtta--------gccatactcattatcattttaatcctgatcacaaaaaatgaaactactaggactttttt--gttattaaattact------tat---tgaagtgtcattacacc--------------
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GTTCCTGAAGCCCTTATTCCTCCAGCAGGGGCTCGTGTTATGTCCCTAACTGATGGTCTCTCCAAGgtgattgacagaactgccagtttagatatgcatttaattattgagttatgttctgagccgattcatattttttctggttacctgattactgtcctctatacatgtaatgtgatgacttctgttttggtgatag