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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctagatactaggtaggtcatgtttccatctaccagggaccatgcttatgttgtttgttctgcatctggatttatcctgacagttgtctgtgttttgcagGTTATCATGAATAAGATTAAGCGCTGCAAAACTGACTCGTTCCCAGG

Basic information

species Oryza sativa
transcript LOC_Os01g54020.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g54020.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G177970_T03 (Zea mays), 3'ss of exon 10
---------------cctagatactaggtaggtc---atgtttccatctaccagggaccatgct--tatgtt-gtttgtt-ctgcatctggatttatcctgaca--gttgtctgtgttttg-cagGTTATCATGAATAAGATTAAGCGCTGCAAAACTGACTCGTTCCCAGG
                   ||||  |  |   ||   |||  ||  | |       ||         ||||| || | || |||    ||||||||| || | |  | | ||||  |||||  |||| ||    |||||||| |||||||||||||||||||| ||||||||
gtaaggatctaaggataatgatatgaattgaatcctcatgcctctgtatttttataacttcaacaacatgttcgtatatttctgtgattggatttattcttatatcgctttctgcattttggtagGTGATTGCAAATAAGATCAAGCGCTGCAAAACTGACTCATTCCCAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgttgtttgttctgcatctggatttatcctgacagttgtctgtgttttgcagGTTATCATGAATAAGATTAAGCGCTGCAAAACTGACTCGTTCCCAGG
                             tcctgac  putative branch site (score: 2)
                        atttat  TA-rich tract