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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atctaattgagatgcatttgagagctaagctaacttattgactgataatacacactttatctgtgatacttgacatcttatgcatagaaattccttgcagGATCTATACGAGACATTATTTTTCATTGTGGACTTGCATGCG

Basic information

species Oryza sativa
transcript LOC_Os01g54020.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88341213|gb|CI639970.1|CI639970
EST:     TACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTTCACTTCAG                         GATCTATACGAGACATTATTTTTCATTGTGGACTTGCATGCGATTACGT
genomic: TACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTTCACTTCAGgtagtggttt ... ttccttgcagGATCTATACGAGACATTATTTTTCATTGTGGACTTGCATGCGATTACGT
EST: gi|88341927|gb|CI644264.1|CI644264
EST:     TACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTTCACTTCAG                         GATCTATACGAGACATTATTTTTCATTGTGGACTTGCAT
genomic: TACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTTCACTTCAGgtagtggttt ... ttccttgcagGATCTATACGAGACATTATTTTTCATTGTGGACTTGCAT
EST: gi|88335142|gb|CI658149.1|CI658149
EST:     TACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTTCACTTCAG                         GATCTATACGAGACATTATTTTTCATTGTGGACT
genomic: TACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTTCACTTCAGgtagtggttt ... ttccttgcagGATCTATACGAGACATTATTTTTCATTGTGGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatacacactttatctgtgatacttgacatcttatgcatagaaattccttgcagGATCTATACGAGACATTATTTTTCATTGTGGACTTGCATGCG
                      acttgac  putative branch site (score: 4)
                                             ttccttgc  putative PPT
                                      atagaaatt  TA-rich tract