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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactatatttgtcacatatgtactgtaagccagtgcttcctttcaattctgttggctctaatgttcttctatttcagGCTCTATGCCGAGGCTATCCTACTGAGTTTGCATCATATTTCCACTATTGCCGCTCACTGCGGTTTGATGACAAGCCTGATTATTCCTACCTTAAGCGAC

Basic information

species Oryza sativa
transcript LOC_Os01g51200.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33679218|gb|CF307457.1|CF307457
EST:     AAATCAGTGAGAAAAAAGTTGCAACATCAATTGAG                         GCTCTATGCCGAGGCTATCCTACTGAGTTTGCATCATATTTCCACTATTGC
genomic: AAATCAGTGAGAAAAAAGTTGCAACATCAATTGAGgtactatatt ... tctatttcagGCTCTATGCCGAGGCTATCCTACTGAGTTTGCATCATATTTCCACTATTGC
EST: gi|163926649|gb|EG713665.1|EG713665
EST:     AACAAAAGTATGAGAAAATCAGTGAGAAAAAAGTTGCAACATCAATTGAG                         GCTCTATGCCGAGGCTATCCTACTGAGTTTGCATCATATTTCCACTATTGC
genomic: AACAAAAGTATGAGAAAATCAGTGAGAAAAAAGTTGCAACATCAATTGAGgtactatatt ... tctatttcagGCTCTATGCCGAGGCTATCCTACTGAGTTTGCATCATATTTCCACTATTGC
EST: gi|58586454|gb|CF984762.1|CF984762
EST:     AAGTTGCAACATCAATTGAG                         GCTCTATGCCGAGGCTATCCTACTGAGTTTGCATCATATTTCCACTATTGC
genomic: AAGTTGCAACATCAATTGAGgtactatatt ... tctatttcagGCTCTATGCCGAGGCTATCCTACTGAGTTTGCATCATATTTCCACTATTGC
EST: gi|33678591|gb|CF306830.1|CF306830
EST:     AACAAAAGTATGAGAAAATCAGTGAGAAAAAAGTTGCAACATCAATTGAG                         GCTCTATGCCGAGGCTATCCTACTGAGTTTGCATCATATTTCCACTATTGC
genomic: AACAAAAGTATGAGAAAATCAGTGAGAAAAAAGTTGCAACATCAATTGAGgtactatatt ... tctatttcagGCTCTATGCCGAGGCTATCCTACTGAGTTTGCATCATATTTCCACTATTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtaagccagtgcttcctttcaattctgttggctctaatgttcttctatttcagGCTCTATGCCGAGGCTATCCTACTGAGTTTGCATCATATTTCCACTATTGCCGCTCACTGCGGTTTGATGACAAGCCTGATTATTCCTACCTTAAGCGAC
                                 ctctaat  putative branch site (score: 3)
                                       tgttcttctatttc  CT-rich tract
                  tttcaatt  TA-rich tract