Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCATCATATTTCCACTATTGCCGCTCACTGCGGTTTGATGACAAGCCTGATTATTCCTACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAGgttagttttgatgtcatgcttgaagtggtccagagcaggcacattattttccctgttacactttaaaaaaaaacccaagaaacattgatttcctcctccatataactgtaaaaggcttattctactcaaaatatccaagcatctagttaattattgttattctgctttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g51200.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33679218|gb|CF307457.1|CF307457
EST:     TGATTATTCCTACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAG                         GTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAAT
genomic: TGATTATTCCTACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAGgttagttttg ... tgctttgcagGTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAAT
EST: gi|163926649|gb|EG713665.1|EG713665
EST:     TGATTATTCCTACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAG                         GTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAAT
genomic: TGATTATTCCTACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAGgttagttttg ... tgctttgcagGTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAAT
EST: gi|66913357|gb|CX100205.1|CX100205
EST:     TTTTTATCCGGGAAG                         GTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAAT
genomic: TTTTTATCCGGGAAGgttagttttg ... tgctttgcagGTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAAT
EST: gi|218488633|gb|FG946946.1|FG946946
EST:     TGATTATTCCTACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAG                         GTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAAT
genomic: TGATTATTCCTACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAGgttagttttg ... tgctttgcagGTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAAT
EST: gi|58586454|gb|CF984762.1|CF984762
EST:     TGATTATTCCTACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAG                         GTTTTCCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAA
genomic: TGATTATTCCTACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAGgttagttttg ... tgctttgcagGTTTTC-AGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAA
EST: gi|33678591|gb|CF306830.1|CF306830
EST:     TGATTATTCCTACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAG                         GTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAAT
genomic: TGATTATTCCTACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAGgttagttttg ... tgctttgcagGTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAAT
EST: gi|33679446|gb|CF307685.1|CF307685
EST:     TACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAG                         GTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAAT
genomic: TACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAGgttagttttg ... tgctttgcagGTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAAT