1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAATCTCAAATTGCTAGTGCTCCACCCCGTGCAGTGgtaagtctctgccttaacagtcaacacccccacaataaatgcatattctatgtagacatctgttggggaagttttgattagtagcctatgttgcag
species | Oryza sativa |
transcript | LOC_Os01g51200.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TACTGAAGTACCAGCAATCTCAAATTGCTAGTGCTCCACCCCGTGCAGTG GGCCATGGTGCAGGACCTTCTGGGTTAGCACCACCAGCATTGCAAAACGACEST: gi|66913357|gb|CX100205.1|CX100205
genomic: TACTGAAGTACCAGCAATCTCAAATTGCTAGTGCTCCACCCCGTGCAGTGgtaagtctct ... tatgttgcagGGCCATGGTGCAGGACCTTCTGGGTTAGCACCACCAGCATTGCAAAACGAC
EST: TACTGAAGTACCAGCAATCTCAAATTGCTAGTGCTCCACCCCGTGCAGTG GGCCATGGTGCAGGACCTTCTGGGTTAGCACCACCAGCATTGCAAAACGACEST: gi|218488633|gb|FG946946.1|FG946946
genomic: TACTGAAGTACCAGCAATCTCAAATTGCTAGTGCTCCACCCCGTGCAGTGgtaagtctct ... tatgttgcagGGCCATGGTGCAGGACCTTCTGGGTTAGCACCACCAGCATTGCAAAACGAC
EST: TACTGAAGTACCAGCAATCTCAAATTGCTAGTGCTCCACCCCGTGCAGTG GGCCATGGTGCAGGACCTTCTGGGTTAGCACCACCAGCATTGCAAAACGACEST: gi|33797259|gb|CF324492.1|CF324492
genomic: TACTGAAGTACCAGCAATCTCAAATTGCTAGTGCTCCACCCCGTGCAGTGgtaagtctct ... tatgttgcagGGCCATGGTGCAGGACCTTCTGGGTTAGCACCACCAGCATTGCAAAACGAC
EST: TACTGAAGTACCAGCAATCTCAAATTGCTAGTGCTCCACCCCGTGCAGTG GGCCATGGTGCAGGACCTTCTGGGTTAGCACCACCAGCATTGCAAAACGACEST: gi|33678591|gb|CF306830.1|CF306830
genomic: TACTGAAGTACCAGCAATCTCAAATTGCTAGTGCTCCACCCCGTGCAGTGgtaagtctct ... tatgttgcagGGCCATGGTGCAGGACCTTCTGGGTTAGCACCACCAGCATTGCAAAACGAC
EST: TACTGAAGTACCAGCAATCTCAAATTGCTAGTGCTCCACCCCGTGCAGTG GGCCATGGTGCAGGACCTTCTGGGTTAGCACCACCAGCATTGCAAAACGACEST: gi|33679446|gb|CF307685.1|CF307685
genomic: TACTGAAGTACCAGCAATCTCAAATTGCTAGTGCTCCACCCCGTGCAGTGgtaagtctct ... tatgttgcagGGCCATGGTGCAGGACCTTCTGGGTTAGCACCACCAGCATTGCAAAACGAC
EST: TACTGAAGTACCAGCAATCTCAAATTGCTAGTGCTCCACCCCGTGCAGTG GGCCATGGTGCAGGACCTTCTGGGTTAGCACCACCAGCATTGCAAAACGAC
genomic: TACTGAAGTACCAGCAATCTCAAATTGCTAGTGCTCCACCCCGTGCAGTGgtaagtctct ... tatgttgcagGGCCATGGTGCAGGACCTTCTGGGTTAGCACCACCAGCATTGCAAAACGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAATCTCAAATTGCTAGTGCTCCACCCCGTGCAGTGgtaagtctctgccttaacagtcaacacccccacaataaatgcatattctatgtagacatctgttggggaagttttgattagtagcctatgttgcag
- - - - - - - - - - - - - - - - - CTGAAG