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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggttttattggtttacccatttgtgtacccttttatgtacaatgcatcaatctttacattgttttctcttcagTCTTCCTTGGCAGGGTCTGAAAGCAGGAACAAAGAAACAAAAGTATGAGAAAATCAGTGAGAAAAAAGTTGCAACATCAATTGAG

Basic information

species Oryza sativa
transcript LOC_Os01g51200.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163926649|gb|EG713665.1|EG713665
EST:     GATGACTTGGAATCTCTTGGATATGTACTTATGTACTTTTTAAGGGGGAG                         TCTTCCTTGGCAGGGTCTGAAAGCAGGAACAAAGAAACAAAAGTATGAGAA
genomic: GATGACTTGGAATCTCTTGGATATGTACTTATGTACTTTTTAAGGGGGAGgtgggtttta ... ttctcttcagTCTTCCTTGGCAGGGTCTGAAAGCAGGAACAAAGAAACAAAAGTATGAGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgtgtacccttttatgtacaatgcatcaatctttacattgttttctcttcagTCTTCCTTGGCAGGGTCTGAAAGCAGGAACAAAGAAACAAAAGTATGAGAAAATCAGTGAGAAAAAAGTTGCAACATCAATTGAG
                                tctttacattgttttc  CT-rich tract
            ttttatgta  TA-rich tract