1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gttagttttgatgtcatgcttgaagtggtccagagcaggcacattattttccctgttacactttaaaaaaaaacccaagaaacattgatttcctcctccatataactgtaaaaggcttattctactcaaaatatccaagcatctagttaattattgttattctgctttgcagGTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAATCTCAAATTGCTAGTGCTCCACCCCGTGCAGTG
species | Oryza sativa |
transcript | LOC_Os01g51200.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGATTATTCCTACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAG GTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAATEST: gi|163926649|gb|EG713665.1|EG713665
genomic: TGATTATTCCTACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAGgttagttttg ... tgctttgcagGTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAAT
EST: TGATTATTCCTACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAG GTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAATEST: gi|66913357|gb|CX100205.1|CX100205
genomic: TGATTATTCCTACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAGgttagttttg ... tgctttgcagGTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAAT
EST: TTTTTATCCGGGAAG GTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAATEST: gi|218488633|gb|FG946946.1|FG946946
genomic: TTTTTATCCGGGAAGgttagttttg ... tgctttgcagGTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAAT
EST: TGATTATTCCTACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAG GTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAATEST: gi|58586454|gb|CF984762.1|CF984762
genomic: TGATTATTCCTACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAGgttagttttg ... tgctttgcagGTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAAT
EST: TGATTATTCCTACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAG GTTTTCCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAAEST: gi|33678591|gb|CF306830.1|CF306830
genomic: TGATTATTCCTACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAGgttagttttg ... tgctttgcagGTTTTC-AGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAA
EST: TGATTATTCCTACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAG GTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAATEST: gi|33679446|gb|CF307685.1|CF307685
genomic: TGATTATTCCTACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAGgttagttttg ... tgctttgcagGTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAAT
EST: TACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAG GTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAAT
genomic: TACCTTAAGCGACTTTTCCGTGACCTTTTTATCCGGGAAGgttagttttg ... tgctttgcagGTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAAT
tattctactcaaaatatccaagcatctagttaattattgttattctgctttgcagGTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAATCTCAAATTGCTAGTGCTCCACCCCGTGCAGTG
agttaat putative branch site (score: 4)
ttctgcttt putative PPT
atctagttaattattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttttgatgtcatgcttgaagtggtccagagcaggcacattattttccctgttacactttaaaaaaaaacccaagaaacattgatttcctcctccatataactgtaaaaggcttattctactcaaaatatccaagcatctagttaattattgttattctgctttgcagGTTTTCAGTTTGACTATGTGTTTGACTGGACAATACTGAAGTACCAGCAATCTCAAATTGCTAGTGCTCCACCCCGTGCAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG