1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAAGGCCTTTGTCTTCTGTGGGTATCTTTCTTGCGTGGCATCTTCTTGGTTACATTGCTTCTGCTGCGTTGTCAACACATTGGGTGCTGTTTCGTATAAGgtatttccatctctctcataccctatttcagtatttccttttctgtttattgattactattttgcactattttctgcttcttttcaatattgtgcattta...
species | Oryza sativa |
transcript | LOC_Os01g29390.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TACATTGCTTCTGCTGCGTTGTCAACACATTGGGTGCTGTTTCGTATAAG GTGGAAGAATTGGTGCAAGCAGACTTGGTTTTATTCTCCTEST: gi|88336897|gb|CI626977.1|CI626977
genomic: TACATTGCTTCTGCTGCGTTGTCAACACATTGGGTGCTGTTTCGTATAAGgtatttccat ... ttttttatagGTGGAAGAATTGGTGCAAGCAGACTTGGTTTTATTCTCCT
EST: TACATTGCTTCTGCTGCGTTGTCAACACATTGGGTGCTGTTTCGTATAAG GTGGAAGAATTGGTGCAAGCEST: gi|88360999|gb|CI625305.1|CI625305
genomic: TACATTGCTTCTGCTGCGTTGTCAACACATTGGGTGCTGTTTCGTATAAGgtatttccat ... ttttttatagGTGGAAGAATTGGTGCAAGC
EST: TACATTGCTTCTGCTGCGTTGTCAACACATTGGGTGCTGTTTCGTATAAG GTGGAAGAATTGGTGCAAGCAGACTTGGTTTTA
genomic: TACATTGCTTCTGCTGCGTTGTCAACACATTGGGTGCTGTTTCGTATAAGgtatttccat ... ttttttatagGTGGAAGAATTGGTGCAAGCAGACTTGGTTTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGCCTTTGTCTTCTGTGGGTATCTTTCTTGCGTGGCATCTTCTTGGTTACATTGCTTCTGCTGCGTTGTCAACACATTGGGTGCTGTTTCGTATAAGgtatttccatctctctcataccctatttcagtatttccttttctgtttattgattactattttgcactattttctgcttcttttcaatattgtgcattta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT