1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGGGCCGGATTTGCACGGGCTGAAGCGGTGCTTCAAGGGTTCTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAGgttaggttctttctactgtatatatatgctttaaacgatatggaaatatcccctgtatttgtggtgccttctgtttcaggtttatgtttgctaacaatctttttctgttgcgcag
species | Oryza sativa |
transcript | LOC_Os01g29390.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAG CTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTCEST: gi|88368648|gb|CI651116.1|CI651116
genomic: CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAGgttaggttct ... tgttgcgcagCTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTC
EST: CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAG CTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTCEST: gi|88591001|gb|CI707906.1|CI707906
genomic: CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAGgttaggttct ... tgttgcgcagCTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTC
EST: CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAG CTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTCEST: gi|88336897|gb|CI626977.1|CI626977
genomic: CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAGgttaggttct ... tgttgcgcagCTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTC
EST: CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAG CTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTCEST: gi|88580946|gb|CI697910.1|CI697910
genomic: CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAGgttaggttct ... tgttgcgcagCTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTC
EST: CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAG CTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTCEST: gi|88360999|gb|CI625305.1|CI625305
genomic: CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAGgttaggttct ... tgttgcgcagCTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTC
EST: CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAG CTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTC
genomic: CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAGgttaggttct ... tgttgcgcagCTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGCCGGATTTGCACGGGCTGAAGCGGTGCTTCAAGGGTTCTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAGgttaggttctttctactgtatatatatgctttaaacgatatggaaatatcccctgtatttgtggtgccttctgtttcaggtttatgtttgctaacaatctttttctgttgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT