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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGCTCTATCGTTTTCATCGCTCTTTTGCTGCTTGCGTCCTCACGTGTACTACTTGATACATCTATTTGTTGTTGCTTTTGATCATTGAATATGGCACGgtaagatgtaggcgacattgtagtttggttgtcagcgctattcgatgtcgcttttcctgtttttaggccttctaatcattctttgatttctggcttgatttgtag

Basic information

species Oryza sativa
transcript LOC_Os01g29390.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88358911|gb|CI619415.1|CI619415
EST:     CTACTTGATACATCTATTTGTTGTTGCTTTTGATCATTGAATATGGCACG                         AGGGCCGGATTTGCACGGGCTGAAGCGGTGCTTCAAGGGTTCTTGATTGAT
genomic: CTACTTGATACATCTATTTGTTGTTGCTTTTGATCATTGAATATGGCACGgtaagatgta ... tgatttgtagAGGGCCGGATTTGCACGGGCTGAAGCGGTGCTTCAAGGGTTCTTGATTGAT
EST: gi|88368648|gb|CI651116.1|CI651116
EST:     CTACTTGATACATCTATTTGTTGTTGCTTTTGATCATTGAATATGGCACG                         AGGGCCGGATTTGCACGGGCTGAAGCGGTGCTTCAAGGGTTCTTGATTGAT
genomic: CTACTTGATACATCTATTTGTTGTTGCTTTTGATCATTGAATATGGCACGgtaagatgta ... tgatttgtagAGGGCCGGATTTGCACGGGCTGAAGCGGTGCTTCAAGGGTTCTTGATTGAT
EST: gi|88591001|gb|CI707906.1|CI707906
EST:     CTACTTGATACATCTATTTGTTGTTGCTTTTGATCATTGAATATGGCACG                         AGGGCCGGATTTGCACGGGCTGAAGCGGTGCTTCAAGGGTTCTTGATTGAT
genomic: CTACTTGATACATCTATTTGTTGTTGCTTTTGATCATTGAATATGGCACGgtaagatgta ... tgatttgtagAGGGCCGGATTTGCACGGGCTGAAGCGGTGCTTCAAGGGTTCTTGATTGAT
EST: gi|88336897|gb|CI626977.1|CI626977
EST:     CTACTTGATACATCTATTTGTTGTTGCTTTTGATCATTGAATATGGCACG                         AGGGCCGGATTTGCACGGGCTGAAGCGGTGCTTCAAGGGTTCTTGATTGAT
genomic: CTACTTGATACATCTATTTGTTGTTGCTTTTGATCATTGAATATGGCACGgtaagatgta ... tgatttgtagAGGGCCGGATTTGCACGGGCTGAAGCGGTGCTTCAAGGGTTCTTGATTGAT
EST: gi|88580946|gb|CI697910.1|CI697910
EST:     CTACTTGATACATCTATTTGTTGTTGCTTTTGATCATTGAATATGGCACG                         AGGGCCGGATTTGCACGGGCTGAAGCGGTGCTTCAAGGGTTCTTGATTGAT
genomic: CTACTTGATACATCTATTTGTTGTTGCTTTTGATCATTGAATATGGCACGgtaagatgta ... tgatttgtagAGGGCCGGATTTGCACGGGCTGAAGCGGTGCTTCAAGGGTTCTTGATTGAT
EST: gi|88360999|gb|CI625305.1|CI625305
EST:     CTACTTGATACATCTATTTGTTGTTGCTTTTGATCATTGAATATGGCACG                         AGGGCCGGATTTGCACGGGCTGAAGCGGTGCTTCAAGGGTTCTTGATTGAT
genomic: CTACTTGATACATCTATTTGTTGTTGCTTTTGATCATTGAATATGGCACGgtaagatgta ... tgatttgtagAGGGCCGGATTTGCACGGGCTGAAGCGGTGCTTCAAGGGTTCTTGATTGAT